Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq145 354 6e-93 seq234 304 1e-77 >seq145 Length=640502 Score = 354 bits (392), Expect = 6e-93 Identities = 1152/1769 (65%), Gaps = 55/1769 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| || ||||| || | ||| || || | ||| || || ||||| ||||| ||||| Sbjct 131323 ATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGATAATACATACCGGT 131382 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | ||| || | |||| |||| ||||| || || |||||||| ||||| | || || Sbjct 131383 TTTTAAGCCGGCTCTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGTTC 131442 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || ||||| || || ||||| || ||||| || || ||||| ||||||| Sbjct 131443 AGCTACGTGTATATTAAATGATTGACTTTGGTCGATAAAAGCGCCGCGATCAACAGCCAT 131502 Query 65257 GTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTAC-CT-- 65312 || ||| | ||| || |||| || ||||| || || || |||| || || Sbjct 131503 GTTGATGGTT-GACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATACTGG 131561 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGC-AATAATGCGATTACGC 65371 || || || | ||||||| || | ||| || ||| |||| |||| | | || | Sbjct 131562 CA---GGTATGGCATCAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT-C 131617 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACT 65431 || || ||| | ||||| || | | || || || || ||| |||||| || Sbjct 131618 ATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGTAAATGATGATTGACTACG 131677 Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 ||||| || |||||||| || || || || || || ||| || ||||| || Sbjct 131678 ATAAACTCACCAGACAGTACGCGTCGTGTGTAAATATTTGAAGTGTATGGCTCAAAAGAC 131737 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 || |||| || |||||||| |||||||| || || ||||| ||||| |||| ||| || Sbjct 131738 TCGTTGTTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGGAGCTACCAGCAAAGAA 131797 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || |||| ||| | ||| ||||| || | || ||| ||||| | | | Sbjct 131798 TTGCGCACTCCATAATTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATA--GATCAG 131855 Query 65612 TCGTCGAC--ATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 | | || |||| |||||||| | ||| ||| | || |||| | || || Sbjct 131856 TAGGCGTTTTATCC------CACATATCATATTGAAGGATACCTTTACTAACTGGACTAC 131909 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGG 65729 | | | |||||| || | | ||||| | |||||| |||| || | || Sbjct 131910 CTTCATATGTTTCGTACGGACCGTATTGTTTGGCCAATTGACAACTGGCTTCTAAGGCAC 131969 Query 65730 CAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACG 65789 | |||| || || || ||||| || ||| | | || | ||||| ||||| | Sbjct 131970 CGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGGCCAGCATTTTCGCTTTCGTAGG 132029 Query 65790 GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 | || ||| | | | | ||| || | ||||| || || |||||||| ||||||| Sbjct 132030 GATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGAT 132089 Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 |||| ||||| || ||| || || || | || |||||||||| |||||| || | Sbjct 132090 GACGTAAATTAGATTTTCTGGCTTCCGGCAGCGGATAGTAATTGACATCGATTATTTTGT 132149 Query 65910 TCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTA 65968 | | || | ||| | | | | | | | | | |||| |||||| | |||||| Sbjct 132150 TGAGGTTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGA-AAATCATATTGTTTA 132208 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 || | || || ||| ||| |||| ||||| || ||||| Sbjct 132209 ------TCTGCCGTTACGAACATATTCAAC---------GCAATTGATGCCAGATTGCAA 132253 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || ||||| || |||| | ||||| ||||| ||||| || |||| |||||||| | Sbjct 132254 ACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTT 132313 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 || ||||| | ||||||||||||||| ||||| || || || || ||||| | |||||| Sbjct 132314 ATAGTGCCAACATTCTGTTGATTACTTTTGCGGTTACAAGCGTCTTTGTAAAGCATGTAA 132373 Query 66149 GGAGTGCCGGTCTCAACTTGGG-ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 ||||| |||||||| ||||||| || || || ||| ||| | | || || | | Sbjct 132374 GGAGTTCCGGTCTCCACTTGGGCGCTGCAT-ATTGCGAACCACAAGTCACGAGCTTGTAT 132432 Query 66208 CGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 || ||| |||| | | ||| || | | ||| | | || || || || Sbjct 132433 TGTTTTGTTCGCTTTACCCTCGTCTTCATATTTTATGTACAATTTGTCAAATTTGTCTCC 132492 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 | ||||| || | || || || || || ||||| || ||||||| |||| Sbjct 132493 ATAAACTTCTTCCAAGCCAGGGCATTTATGGGGGCACATTAGAGACCAATGCTCATCAGC 132552 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 || || | ||| || ||||| |||||||| || || || || | || ||||| || Sbjct 132553 CTCCACTCTTTTCATGAACAGATCCGGTATCCACAGAGCATAAAATAAGTCCCGTGCACG 132612 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 | |||||| | || |||||| ||| | || || || || || || || ||||| Sbjct 132613 ATCCTCCTCTTTACCCGTATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCA 132672 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || || | ||| || || || | ||| |||||| || |||||||||||||| || || Sbjct 132673 AGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACG 132732 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA---TTTGCCATTGGT 66564 || ||||||||||| | ||||||||| || || || |||| ||| | || || | Sbjct 132733 GGCAACATTGTTGAACAAACGCAACATAGGAACAAGACCGTCAGACACATCGCTAT---T 132789 Query 66565 GCCGTCGATG--GGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 || |||| | ||| ||| ||||| |||| ||| ||||| || |||||| Sbjct 132790 ACC--AGATGTCTTAGTCCCTTTTGCTCGTATGCAATGAATATTTAGACCTATTCCACCG 132847 Query 66623 GCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 |||| ||| || || |||||| | | | || | | | || || |||| |||||| Sbjct 132848 GCCGACTTAGAAATTTTAGCACATTGGTCTACAGCCTTCATAATACCATCAACGGAGTCT 132907 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGA--ACTA-AGTTGGGGTTTGGGTGTGGCGGCCGAG 66739 | || || || | | |||| || || | || || || || || || || Sbjct 132908 TCTGGCATAGTTAGCAAGAAGCAGGACGACAATTGTGGGCGTATG---GTAGCAGCACCA 132964 Query 66740 AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATG 66799 || | || || | ||| || ||||||||| | | |||||| ||| || || || || Sbjct 132965 AATAAAGTTGGGGAAGCATGAGTAAAGTAACGCCCCGACATGAGATTATAAGTTTCAATA 133024 Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCC 66828 | || ||||||| ||||| ||||| || Sbjct 133025 GCCGCTTCAATGTCATCGCCGTGAATGCC 133053 >seq234 Length=462357 Score = 304 bits (336), Expect = 1e-77 Identities = 401/551 (73%), Gaps = 4/551 (1%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||||||||| || || ||||| | |||||||| ||| | || ||||||||| | || | Sbjct 280230 AGGCGGAAGCCTCTTTTTGGACTGCTGAGGAGGTTGATCTCTCTAAAGACATGGACGATT 280289 Query 61166 GGGAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 || | || ||| ||| ||| |||| ||||| ||| |||||| ||||| || ||||| Sbjct 280290 GGAATCGGTTAAGCGA-CGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCG 280348 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || ||||| || |||||||||||| ||||||| || | || ||||| ||| | Sbjct 280349 GCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATA 280408 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | || || ||||| || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 280409 ACCGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATG 280468 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404 || ||| | || ||||| || || |||| ||| ||||||||| | || ||| Sbjct 280469 TATAGTTTACTTATCGAAACATATATCATGGATGAAAAAGAACGTGAATATCTATTTAAT 280528 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 ||||| ||||| || || ||| ||| ||| ||||| ||||| | |||||| | | Sbjct 280529 GCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCTTGGAT-ATC 280587 Query 61465 AGTACA-ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523 | || |||||| |||||||| || | | || || || | ||||| ||| |||| Sbjct 280588 ATCGCATTCGGCTAATTTTGGTGAGCGTGTAATAGCTTTCGCTGCCGTCGAAGGTATATT 280647 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 || ||||| || || | || |||||| | |||||||||||| | ||||| ||| | Sbjct 280648 CTTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTT 280707 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTT 61643 || ||| ||||| ||||||||||||| || ||| |||| ||||| ||||| || || Sbjct 280708 AACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATT 280767 Query 61644 GCTATTCAAAC 61654 | || |||| Sbjct 280768 AATGTTTAAAC 280778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557315981200