Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20austeni_20[genbank_20GCA_5F000688735.1_202014-05-12] 2,205 sequences; 370,264,922 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq54 141 3e-29 seq135 98.7 3e-16 >seq54 Length=1154455 Score = 141 bits (156), Expect = 3e-29 Identities = 246/356 (69%), Gaps = 4/356 (1%) Strand=Plus/Plus Query 2520 ATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATC 2579 ||| ||||| || |||| ||||||| ||| ||| |||| | || |||||||||| Sbjct 975437 ATATCCAATAATTTCTATAGAAGATGCAATGAGTGAAGACGATTACGAAGGTTGGAAATT 975496 Query 2580 TCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAA 2639 ||||||| | | || ||||| ||||||||||||| || || || || || || || Sbjct 975497 ACTTACTGCAAAATTGGGGAGTAAAATTCAATTGGTTGGGGATGATTTATTTGTTACAAA 975556 Query 2640 CACTG--CTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAA 2697 || || | | | ||||| || | |||| | || || | | || ||||| Sbjct 975557 TTGTGAACTAA--TAGGCAAAGGAATAGAAGAAAAAATGGCAAATGCTGTACTGATCAAG 975614 Query 2698 GTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCT 2757 || ||||| || || || || |||||||||| ||||| |||||||| ||| | Sbjct 975615 CCAAATCAAATAGGAACGTTAACAGAAACTTTTGCTGCTATTGAAATGGCAAAATCAAAC 975674 Query 2758 GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGAT 2817 |||| ||| || | || ||||| ||||||||||| ||||| ||||||| || || Sbjct 975675 AACTACAAAGCTGTTATTTCTCACCGCTCAGGTGAAACAGAAGACACAACAATATCTCAT 975734 Query 2818 ATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGA 2873 || ||||||||| | || || ||||| || || || || |||| ||| |||| Sbjct 975735 ATAGCAGTTGCATCAAATTGCGGGCAAATAAAAACCGGGTCGCTGTCGCGTTCTGA 975790 >seq135 Length=742707 Score = 98.7 bits (108), Expect = 3e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760 |||||||||||| | || || |||||||| | | || |||| || ||| |||| ||| Sbjct 287363 AACCAAATCGGTTCATTAACAGAAACTTTAAAAGTAATTAAAATAGCTAAAAAAGCAGGA 287304 Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820 || | | | | ||||| || || || |||||||||||| |||||| |||||| | Sbjct 287303 TATTCTACTATTATTTCACATCGATCTGGCGAAACTGAAGATGTAACAATAGCTGATTTA 287244 Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880 | |||| ||| | |||||||||||||| || || || || | || |||| Sbjct 287243 TCTGTTGGAACAGCATCAGGTCAAATTAAGACTGGATCTATGAGTCGATCGGATCGTACA 287184 Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 || ||||| || | ||| ||||||| || || Sbjct 287183 GCGAAATATAATCGATTAATTCGTATTGAGGA 287152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156034314232020