Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq210 87.8 3e-15 seq4 84.2 3e-14 >seq210 Length=349908 Score = 87.8 bits (96), Expect = 3e-15 Identities = 159/221 (72%), Gaps = 15/221 (7%) Strand=Plus/Plus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 |||| |||||| |||| ||||| || ||||||| | |||||| |||| |||| || | Sbjct 339549 GCAGCGACGTAATCAATGCGAG-TTAATGACTCACACTTACT-GGAAATTCCAAATTCAT 339606 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT---TCAAAGATT-ACCCGG 125 | || |||| || | | ||||| | || ||||||| ||| | || | |||| Sbjct 339607 -ATGAATAATTTCAGTTCACAATCCCAAACA---TGAAATTGGTTCAGCGGTTTATCCGG 339662 Query 126 ACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGCCCA 184 | | | | | || ||| | |||||| ||| | || ||||| |||||||| ||||| Sbjct 339663 TCTTCTTGCTCTTGGAAATA--CGCGTTGA-TACTTTCATTGTAGAGCGCGTGCAGCCCA 339719 Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||| ||| || ||||||||| |||||| ||||| || Sbjct 339720 GAACATCTGAGGACAACACAGACCTATTATTG-CTCAATCT 339759 >seq4 Length=5511614 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 || ||||||||| || | | || ||| || ||||| | ||| | | ||||||||| Sbjct 237190 TTTCCCGGACCTCTCTGTCTAGAAAATACAC--GTTGATACCTTCATTTTTGCGCGCGTG 237133 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||||||||||||||||||||||| |||||||||||| Sbjct 237132 CCTCCCAGAACATCTAAGGGCATCACATACCTGTTATTGC 237093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751987972465