Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq245 105 1e-20 seq163 93.3 7e-17 seq20 93.3 7e-17 seq326 82.4 1e-13 seq186 78.8 1e-12 seq1 78.8 1e-12 seq4 77.0 5e-12 seq210 73.4 6e-11 seq9 73.4 6e-11 >seq245 Length=324054 Score = 105 bits (116), Expect = 1e-20 Identities = 84/99 (85%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATC--ACTCCACCAACTAAGAACGGCCATG 217 |||| |||||||||| |||||| |||| ||| ||||||| ||||||||||||||||| Sbjct 188387 TCTCTTTCGTTATCGAAATTAATCAGAGAAAAAGTACTCCACGAACTAAGAACGGCCATG 188328 Query 218 CACC-ACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||| |||| ||||| | || |||||||| ||||||||| Sbjct 188327 CACCAACCATCCATAAATTCGAGAAAGAGTTATCAATCT 188289 >seq163 Length=551669 Score = 93.3 bits (102), Expect = 7e-17 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||||||||||||||| | ||| ||||||||| || || |||||| |||||||| Sbjct 154576 GTCTCATTCGTTATCGGAATTGATAAGATAAATCACTCTACGAAATAAGAATGGCCATGC 154517 Query 219 ACCAC----CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||||| || |||| |||| |||||||| Sbjct 154516 ACCACCATTCACCCATAGGTTCGGAAAAGTACTATTAATCTGTC 154473 >seq20 Length=2747654 Score = 93.3 bits (102), Expect = 7e-17 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 ||| |||||||||||||| |||||||||| |||| ||||||||||| || ||||| Sbjct 814520 GTTTGTTATCGGAATTAATTAGACAAATCAGTCCATGAACTAAGAACGTCCGTGCAC--T 814463 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||| | | || |||||||||| |||||||||| Sbjct 814462 CATCCACATATTCGAGAAAGAGCTTTCAATCTGTC 814428 >seq326 Length=230650 Score = 82.4 bits (90), Expect = 1e-13 Identities = 69/83 (83%), Gaps = 4/83 (5%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||||| |||||||||||||||| || | ||||||||| ||||||||||||| |||| Sbjct 65062 TCTCGTACGTTATCGGAATTAAC---ACCA-TCACTCCACAAACTAAGAACGGCTCTGCA 65117 Query 220 CCACCACCCATAGAATCAAGAAA 242 ||| || |||||| || ||||| Sbjct 65118 TCACTACTCATAGATTCGAGAAA 65140 >seq186 Length=550328 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 || ||||||||||||||| | ||||||||||||||| || ||||||| ||||| ||| Sbjct 636 GTACGTTATCGGAATTAATCGGACAAATCACTCCACGAAGTAAGAACACACATGCGCCAA 695 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||| || | || ||||| || | ||| ||| Sbjct 696 CACCTGTAAAGTCGAGAAATAGTTGCCAACCTG 728 >seq1 Length=10097680 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/101 (78%), Gaps = 10/101 (10%) Strand=Plus/Plus Query 159 GTCTCGTT--CGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 |||||||| ||||||| ||||||||| ||||||| ||||||| |||||||||||| Sbjct 1095404 GTCTCGTTATCGTTATCAGAATTAACCGGACAAATTACTCCACGAACTAAGAACGG---- 1095459 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||| | |||| | |||||||||||||||||||| Sbjct 1095460 TCACGTCATGCCAT----TAGAGAAAGAGCTATCAATCTGT 1095496 >seq4 Length=5511614 Score = 77.0 bits (84), Expect = 5e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||| | | |||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 237152 CCTTCATTTTTGCGCGCGTGCCTCCCAGAACATCTAAGGGCATCACATACCTGTTATTGC 237093 >seq210 Length=349908 Score = 73.4 bits (80), Expect = 6e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| ||||| |||||||| ||||||||||||| ||| || ||||||||| |||||| ||| Sbjct 339696 TCATTGTAGAGCGCGTGCAGCCCAGAACATCTGAGGACAACACAGACCTATTATTG-CTC 339754 Query 76 AAACT 80 || || Sbjct 339755 AATCT 339759 >seq9 Length=4170871 Score = 73.4 bits (80), Expect = 6e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct 3199806 GGCCATGCAACACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 3199853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796787255931