Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq301 199 7e-49 seq93 150 3e-34 seq270 114 2e-23 seq34 86.0 1e-14 >seq301 Length=213326 Score = 199 bits (220), Expect = 7e-49 Identities = 135/150 (90%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121141 GTCATTAGTAGGGGAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 121082 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 121081 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 121023 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||||||||||| ||||||||| Sbjct 121022 ACATCGAAGGATCAAAAAGCGACGTCGCTA 120993 Score = 129 bits (142), Expect = 1e-27 Identities = 119/150 (79%), Gaps = 13/150 (9%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| Sbjct 12745 GTCATCAGTAGGGTAAAACTAACCTGTCTC---ACGGTCTAAACCAAGCTTACGTTCC-- 12691 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || ||||||||||||| |||| | ||||| || ||| ||| |||||||| Sbjct 12690 ----ATGAGTGAACAATCCAAAGCTTGCTGAATTTTGATTCACAATGGTAGGAAGA---- 12639 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||| |||||||||||||| || |||||| Sbjct 12638 TGATCAAAGGATCAAAAAGCGACATCGCTA 12609 >seq93 Length=773282 Score = 150 bits (166), Expect = 3e-34 Identities = 146/185 (79%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 ||| ||||||||||||| |||| ||||| | |||| ||||||||||||||||| || Sbjct 585159 GTGTGTGAACAATCCAAAGCTTGGTGAATTTTACTTCACAATGATAGGAAGAGCCGATAT 585100 Query 154 CGAA-GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC---AGTTATC 209 |||| |||||||||| ||||| ||||| ||| |||||||||||||||| ||||||| Sbjct 585099 CGAATCGATCAAAAAGGGACGTCACTATGGACGTTTGGCTGCCACAAGCCACAAGTTATC 585040 Query 210 CCTGTGGTAACTTTTCTGGCAC--CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT 267 ||||| |||||||||||| ||| |||| | ||| | | | ||||||||||| Sbjct 585039 CCTGTAGTAACTTTTCTGACACAACTCTTGTTAAAAACTCCTTAAATCAAAAGGATCGAT 584980 Query 268 AGGCC 272 ||||| Sbjct 584979 AGGCC 584975 >seq270 Length=255924 Score = 114 bits (126), Expect = 2e-23 Identities = 115/150 (77%), Gaps = 16/150 (11%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||| |||||||||||| |||||||||||| |||| ||||||| Sbjct 147735 GTCATTAGTAGGGTAAAGCTAACCTGTCTC---ACGGTCTAAACCAAGCTTACGTTCC-- 147681 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || ||||||||||||| |||| | ||| || ||| ||| ||||||| Sbjct 147680 ----ATGAGTGAACAATCCAAAGCTTGGTGCATTTTGATTCACAATGGTAGGAAG----- 147630 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||| |||||||||||||| ||||||||| Sbjct 147629 --ATCAAAGGATCAAAAAGCGACGTCGCTA 147602 >seq34 Length=1826167 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 |||||| ||| ||||| ||||| | |||| |||||||||| | ||||||||||| | Sbjct 1396858 AACAATTCAAAGCTTAGTGAATTTTTCTTCACAATGATAGGAAAAATCGACATCGAAGTA 1396799 Query 161 TCAAAAAGCAACGTCGCTATGAACG 185 ||||| |||||| |||||||||||| Sbjct 1396798 TCAAAGAGCAACATCGCTATGAACG 1396774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854385893856