Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq210 89.7 1e-15 seq4 77.0 6e-12 >seq210 Length=349908 Score = 89.7 bits (98), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||| ||||||||| || ||| ||||||||||||| |||||||| |||| Sbjct 339759 AGATTGAG-CAATAATAGGTCTGTGTTGTCCTCAGATGTTCTGGGCTGCACGCGCTCTAC 339701 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTG-GCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 | ||| || ||||| || || || | || ||| | | || ||| | | || | Sbjct 339700 AATGAAAGTATCAACGCGT--ATTTCCAAGAGCAAGAA-GACCGGATAAACCGCTGAACC 339644 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | || || | ||||| | | | || ||||||| | | || ||||| | ||||| Sbjct 339643 AATTTCATGTTTGGGATTGTGAACTGAAATTATT-CATATGAATTTGGAATTTCCAGTAA 339585 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 | | | ||||| | | ||| ||||||||||| |||| Sbjct 339584 GTGTGAGTCATTAACTCGCATTGATTACGTCGCTGC 339549 >seq4 Length=5511614 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||| |||||||||||||||||||||||| |||||||||| | | ||| Sbjct 237093 GCAATAACAGGTATGTGATGCCCTTAGATGTTCTGGGAGGCACGCGCGCAAAAATGA 237149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947184361728