Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq8 242 1e-61 seq1189 237 5e-60 seq516 165 3e-38 seq9 165 3e-38 seq17 145 2e-32 seq265 89.7 2e-15 seq6 84.2 7e-14 seq93 77.0 1e-11 seq57 75.2 4e-11 >seq8 Length=4454774 Score = 242 bits (268), Expect = 1e-61 Identities = 155/169 (92%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || |||||||||||||||||||| ||| ||||| |||| ||| ||||||||||||||| Sbjct 2794296 GATTAGAGTCAAGCTCAACAGGGCCTTGTTTCCTCGCTAATTTTTCCAAGCCCGTTCCCT 2794355 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2794356 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAAGAATCTCGTTAATCCATTCATG 2794415 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 ||||||||||||||||||| ||||||||||| | ||||||||||||||| Sbjct 2794416 CGCGTCACTAATTAGATGATGAGGCATTTGGATCCCTTAAGAGAGTCAT 2794464 >seq1189 Length=3914 Score = 237 bits (262), Expect = 5e-60 Identities = 145/154 (94%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 3898 GATTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCT 3839 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 3838 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAATAATCTCGTTAATCCATTCATG 3779 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||| Sbjct 3778 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 3745 Score = 152 bits (168), Expect = 2e-34 Identities = 89/92 (97%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 92 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTGAC 33 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 ||||||||||||||||||||||||||||| || Sbjct 32 ATTCAGAGCACTGGGCAGAAATCACATTGTGT 1 >seq516 Length=57182 Score = 165 bits (182), Expect = 3e-38 Identities = 127/151 (84%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||||||||| |||||||| |||||| |||| | | ||| ||||| |||||||||| Sbjct 42697 TAGAGTCAAGTTCAACAGGATCTTCTCTCCCTGTTAATTTTTTTAAGCCTGTTCCCTTGG 42756 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||| Sbjct 42757 CTGTGGTTTTTCTAGATAGTAGATAGGGACAGAAAGAATCTCATTAATTTGTTCATGCGC 42816 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||| |||||| || |||||||| Sbjct 42817 GTCACTAATTAGCTGACGAAGCTTTTGGCTA 42847 >seq9 Length=4170871 Score = 165 bits (182), Expect = 3e-38 Identities = 96/99 (97%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3197267 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTG 3197326 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||| Sbjct 3197327 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 3197365 >seq17 Length=2831775 Score = 145 bits (160), Expect = 2e-32 Identities = 94/103 (91%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490 ||||| |||||||||||||||||||| ||||||||| ||||| || ||||||||||| Sbjct 1163020 TACCTATCGAGAGTCATAGTTACTCCCGTCGTTTACCCACGCTTACTTTAATTTCTTCAC 1163079 Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1163080 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1163122 >seq265 Length=252741 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 240638 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 240579 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 240578 ATTTGAAAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 240532 >seq6 Length=4722141 Score = 84.2 bits (92), Expect = 7e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||| Sbjct 3721690 GAATCTCGTCAATCCATTCATGCGCTTCACAAATTAGATGACGAGGCATTTAGCTA 3721635 >seq93 Length=773282 Score = 77.0 bits (84), Expect = 1e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 540491 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 540550 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| | |||||| ||||||||| | ||| ||||||| Sbjct 540551 ATTTGAGAGATGTACGGCCCCAATCAAACTCCCTATCTGGCAATGTC 540597 >seq57 Length=1462083 Score = 75.2 bits (82), Expect = 4e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC-CCGTTCCCTTG 340 |||||||||||| ||||||| |||||||||||||| ||| ||| | | ||| |||| Sbjct 253350 TAGAGTCAAGCTTAACAGGGACTTCTTTCCCCGCTAATTTTTTCAAACTCTTTTCTCTTG 253291 Query 341 GCTGTGGTTTCGCTAGATAGT 361 ||||| |||| || ||||||| Sbjct 253290 GCTGTTGTTTAGCCAGATAGT 253270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635173002848