Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq41 206 8e-51 seq30 203 1e-49 seq34 96.9 1e-17 seq97 78.8 3e-12 >seq41 Length=1558517 Score = 206 bits (228), Expect = 8e-51 Identities = 277/377 (73%), Gaps = 15/377 (4%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||| |||||||||||||||||| ||||||||||||||| ||||| | || Sbjct 726068 ATTGGGTAATTTATGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTGCTCAGACACCA 726127 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||||||||| |||||| ||||| |||||||||||| |||||||||| || || Sbjct 726128 TCTCCGGAATCTAACCCTCATTCCACGTTACCCGTTGCAACCATGGTAGTTTTAAATGCT 726187 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCG 252 |||||| ||| ||||||||||| ||||||| || | ||| ||| |||| |||| | Sbjct 726188 ACCATCAGGAGTGGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACC 726247 Query 253 ATTCGTTAAGTTATTATGAAT--CACCA----AGGAGCCCCGAAGGGCGTTGGTTTTTTA 306 | || | ||||| || | |||| | || || || | |||| | ||| Sbjct 726248 A-TCTGCAGGTTATCTAGAGTTCAACCATTATACGA-CCAAAAACGTCGTTTGGCTTTAG 726305 Query 307 TCTAATAAATACACCCCTTCC--GAAGTCGGGGTT-TTTAGCATGTATTAGCTCTAGAAT 363 ||||||| ||| | |||| | ||| | || | | ||| |||||||||||||||| Sbjct 726306 CTTAATAAACGCACACGTTCCATTGACTCGTGTTTATATTGCAAGTATTAGCTCTAGAAT 726365 Query 364 TACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGAG 421 || | | ||||||| ||| | || || || || ||| ||||||||| ||||||| Sbjct 726366 TATCGCATTTATCCAAGTA--ACTGTTAACGGTCTAAGGAACCATAACTGATATAATGAG 726423 Query 422 CCATTCGCAGTTTCACT 438 || || || |||||||| Sbjct 726424 CCTTTTGCGGTTTCACT 726440 >seq30 Length=1775429 Score = 203 bits (224), Expect = 1e-49 Identities = 289/398 (73%), Gaps = 28/398 (7%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||| || |||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1174692 TGGGTAATTTACGAGCCTCCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCACTC 1174633 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||||||||||||||| |||||||||||||||||| |||||||||| ||||| Sbjct 1174632 TCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATGGTAG-------TCCTA- 1174581 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 ||| ||||||||||||| ||||||| || ||| ||| | || |||| ||| Sbjct 1174580 ----AAAATTTGATAGGGCAGACATTTGAAAGATTTGTCGTCGGTACTAGACCATACGA- 1174526 Query 255 TCGTTAAGTTAT-TATGAATCACCAAGGA----GCCCCGAAGGGCGTTGGTTTTTTATCT 309 || ||||||| || ||| | | | || ||| || | | |||| || Sbjct 1174525 TCTGCAAGTTATCTAGAGTTCAACTATTATACGACCAAAAAGATCGCTTGGTTTTAGCCT 1174466 Query 310 AATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTAC 366 || ||| ||| | |||| ||| | ||| || | |||||||||||||| ||| || Sbjct 1174465 AACAAAAGCACACGTTCCATTTGTCCGTATTTGTATTGTATGTATTAGCTCTAAAATAAC 1174406 Query 367 CACGGTTATCCATGTAGTAA--GGTA-CTATCAAATAAACGATAACTGATTTAATGAGCC 423 ||| |||||||| ||||| | || | ||| || ||| | ||||||| ||||||||| Sbjct 1174405 CACAGTTATCCA---AGTAACTGTTACCGATCTAAGGAACAACAACTGATATAATGAGCC 1174349 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || | ||||| || | || | | | ||||||||| Sbjct 1174348 TTTTCCGGTTTCCCT-TTTAATTCGTGTGTACTTAGAC 1174312 >seq34 Length=1826167 Score = 96.9 bits (106), Expect = 1e-17 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | | |||||| || || | |||| ||| ||||| | |||||||||||| Sbjct 667492 TATTTTTCGGCACTACATCATCGAGCTGGGAGTGGATAATTCATATGACTGCTGCCTTCC 667551 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 || || |||||||||||||||||||| ||||||||||||| ||||| Sbjct 667552 TTAGAGGTGGTAGCCGTTTCTCAGGCCCCCTCTCCGGAATTGAACC 667597 >seq97 Length=933408 Score = 78.8 bits (86), Expect = 3e-12 Identities = 126/179 (70%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88 || |||| ||| | ||| | |||| || ||||||| || | ||| |||||| ||| Sbjct 719242 GAACCCTATATTGTTCTTTTTCGTCATTAACTCCCCGAACAGGTAGTGGATAATTTACGC 719183 Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 |||||||| | || | |||||||||| ||||| | ||||| || ||||||||||| Sbjct 719182 ACCTGCTGCTTACCCTAAATGTGGTAGCTTTTTCTTAATCTCCCGTTCTGGAATCGAACC 719123 Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC--ACTATCCTACCATCGAAAGTT 205 ||| || ||| | | || | |||| ||||| | ||| ||| ||| |||||| Sbjct 719122 TCGATTTCCTCTTAACTGGTGCAAACATGACAGGCCTAAGTAT--TACTATCAAAAGTT 719066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510375063296