Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq439 239 2e-58 >seq439 Length=76666 Score = 239 bits (264), Expect = 2e-58 Identities = 411/597 (69%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 5489 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5548 ||| ||||| ||||| ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 5549 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAACCACGACATA 5608 ||| || || ||| ||||| | | ||||| || || | || |||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 5609 ATGCAGTCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 5668 || ||||||||||| ||||| || ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 5669 TGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 5728 || ||||||||||| |||| ||||| ||||| || |||| || ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 5729 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCATT 5788 | || | || || || || || || || ||||| || || || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 5789 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAGAT 5848 || ||||| || |||||||| ||||| || ||||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 5849 GATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGGGTTCTGGCGTCGTT 5908 ||| ||| || |||| | | || | |||||||||||| || ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 5909 CTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACACCGGTGCA 5968 |||| | ||||||||| | || | | || || ||||| |||| ||||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 5969 AACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTCCTGA 6028 || |||||||| ||| ||| |||||| ||| ||| | || | |||||| || ||||| Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Query 6029 GCGGGGTTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAA 6085 || || | | |||||| | | | ||||| ||||| ||| |||| || || || Sbjct 69887 ACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 Score = 89.7 bits (98), Expect = 2e-13 Identities = 97/125 (78%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 16908 TTAGTTGGTAAAAATGCCCGCTCCCTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCAT 16967 ||||| || ||||| || || |||||||||||||||||||||||||| || | ||| Sbjct 38527 TTAGTCGGCAAAAACGCACGTAGTCTCATCCTCTGGACAGAACGCGGAGCCGCTTGACAT 38586 Query 16968 G-CAAAATGCTCGAAACCGATCAGGCGTGGGAAGTNTTCGA-AAACTGGAAAGACTGCTA 17025 | ||| ||| | || || ||| | || |||||||| ||||| |||||| |||| || || Sbjct 38587 GCCAAGATGTTTGAGACTGATAAAGCATGGGAAGTATTCGAGCAACTGG-AAGATTGTTA 38645 Query 17026 TTTCA 17030 |||| Sbjct 38646 CTTCA 38650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175542158318796