Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq550 145 2e-30 >seq550 Length=29371 Score = 145 bits (160), Expect = 2e-30 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 18254 CCGGCTGGAGACCATCTATCGGACGAACATACAGAGCGCCATGATGGCGGCCCGCTACAA 18313 |||||||||||| || | ||| || || | ||| ||| ||||| | ||||| | Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTATCA 14186 Query 18314 GCAGATGCTGGCCAATGTCCGCTTCCGGCCCTACTGGCAGTACATCGCCGTGATGGACGG 18373 || | ||| | || ||| | ||||||||||||||||| | || ||||||||| | Sbjct 14185 GCGGCTGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGACAG 14126 Query 18374 TCGCACGCGCCCGTCGCACGCGGCGCTGCATGGCCGGGTGTACCGCTATGACGATCCCAT 18433 | ||| ||||| || || ||||||||||||||||||| ||| ||||||||| | Sbjct 14125 CCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCGGG 14066 Query 18434 TTGGCAGTACCTGTTTCCGCCCAACGGTTACAACTGCCGATGCCGGGTCGTGGCGCTG 18491 ||| | ||||||||| || ||||| ||||||||||| |||||||| ||||||| Sbjct 14065 CTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCGGGTACGGGCGCTG 14008 Score = 107 bits (118), Expect = 5e-19 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 17185 CCGAGTCCAAAGCGATCCTGGGAGGCACGCTGACCAGCCAGGCGGACGGCAAGACTTCGA 17244 || ||||||| | || ||||| ||||| ||||||| ||||| |||||||||| | Sbjct 15245 CCCAGTCCAAGGTCATTCTGGGCGGCACCCTGACCACACAGGCAGACGGCAAGAACAGCA 15186 Query 17245 CCAATGCGCTGGGCAACGTCCACAACGAAGTGCGCCACGACATCACAGCGTCCGACTGGC 17304 ||||||| ||||||||||| || ||||| | ||||||||| | || || ||| | Sbjct 15185 CCAATGCCCTGGGCAACGTGCATAACGAGGGGCGCCACGAGCTGACCGCCAGCGATGCGG 15126 Query 17305 GGCAGCTTTCGGCCACGCTGACCCGCGACATGGGCTATTCCCTCCTGGCGCTGAACGGC 17363 ||||| | | |||||||||||||||| || |||| || || ||| |||||| Sbjct 15125 TGCAGCGGGCCGGCACGCTGACCCGCGACCTGCTCTATCGGCTGCTCAAGCTTAACGGC 15067 Score = 105 bits (116), Expect = 2e-18 Identities = 282/420 (67%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 9109 GAGGAGTACGGCGTCCAGCGCGGCGGCAGCAAAGGCAACGTGACCCTCCACAGCTTCGAC 9168 ||| ||||||| || | || |||||||| |||||||| ||||| || | ||| || Sbjct 23175 GAGCAGTACGGGGTAAAACGTGGCGGCAGAAAAGGCAATGTGACGCTGTATTCCTTTGAT 23116 Query 9169 GGCCGTTACAAGGTCCGACTGGCCCATGCCG-ACACCATGAAGTTTGACGAGCGTCTGCA 9227 ||||| |||||||| | |||| ||| | || ||| | ||||| |||||| | || Sbjct 23115 GGCCGCTACAAGGTTATCCGCGCCC-TGCAGGACCGCATTACCTTTGATGAGCGTATTCA 23057 Query 9228 GGCCGCCAAGACCATCATTGACGACCTGATGACCGAGTGGACAGAGGGATCGCGCCCCGA 9287 |||||||||| | | ||||| || ||||| || ||||| || |||| || || Sbjct 23056 GGCCGCCAAGGCATTGATTGATGATTGCATGACGGAATGGACGCAGAATGCGCGACCGGA 22997 Query 9288 AATCAAGGCCATCAT---CCAGCGCGCTTTCGACACCGACAAAGAGGGCAACTTGAACAC 9344 | |||||| || |||| || |||| ||||||||| | || | | || | Sbjct 22996 GCTGCTGGCCATTATTGACCAG-GCATTTTC--CACCGACAAGAACGGAGATATTAATCC 22940 Query 9345 CGGCCGCGTGCTGTCGCTGCGCAGTCTGGACATCAAGGATGCGCGTTGGCAGCAGGCGAT 9404 | ||| | ||| || ||| | | || || | || |||| ||| || ||| || Sbjct 22939 GGCCCGTATTCTGCAGCGGCGTCGCCATGATATTACCGACCCGCGCTGGTTGCGGGCAAT 22880 Query 9405 GACCGCGATTGGCGACAGC-GTCCAGGTCGTGGGCACCAAGAGCTACGTGCGCTTCTATG 9463 | ||| ||||| ||| || ||||| || ||| |||||||||| | ||| | || | Sbjct 22879 GGATGCG-CTGGCGGAAGCGGTGCAGGTGGTCAGCAGCAAGAGCTACATTCGCCTTTACG 22821 Query 9464 AGCGCATCGAGGGCACGGACGAGTATCAGGCCG-TGTTGCTCGACCTAGCCAAGGTGTGA 9522 |||| ||||| | || | | |||| ||||| ||| ||| || | || ||||||| Sbjct 22820 AGCGTATCGACGAGACCGGGCAATATC-GGCCGCTGTCGCTGGATATCGCAGGGGTGTGA 22762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134086971089586