Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_033749.1 Length=2221 Score E Sequences producing significant alignments: (Bits) Value seq261 102 1e-18 >seq261 Length=289332 Score = 102 bits (112), Expect = 1e-18 Identities = 294/457 (64%), Gaps = 33/457 (7%) Strand=Plus/Minus Query 1059 ATCACTCCTTTCACTAAGCTGGAGAAAATGTCAACATCTAAATACAAAGCTCCAAGACTT 1118 ||||| |||||||||| || || || ||||| ||| || |||||| |||| ||||| Sbjct 266036 ATCACATCTTTCACTAAACTTGAAAAGATGTCGACAAACAAGTACAAAACTCCTCGACTT 265977 Query 1119 ATACAAGGAAGGCACCCCACATTTAACTTATGCTATGGACGCTATATCAAACCACTGGAA 1178 || |||| ||||| || | ||| || | |||||| ||||||||| ||| || Sbjct 265976 ATTCAAGCTAGGCATCCAATATTCAATCTGGCTTATGGAGTATATATCAAATTACTCGAG 265917 Query 1179 CGCAGTCTCAAAGGCGACCGACACTTTGGCAAAGGAACTTACGACGATATTGGCCGCAAA 1238 || |||||| ||| ||||||||||||| ||| ||| ||| |||| ||| Sbjct 265916 CGAGCTCTCAAGCCAGACATACACTTTGGCAAACGAAATTATGACCGAATTGATTTTAAA 265857 Query 1239 ATACACAAGCTCTCT------CGCAA----ATATAAATACTACACTGAGGGAGACCATAC 1288 | |||||| | | ||| ||| | ||| | |||| |||||| || Sbjct 265856 GTTGGCAAGCTTAGTAAACGACACAAAAGGATACGATTACGATACTGGAGGAGACGATTG 265797 Query 1289 TACCTTTGACTCTCACGTCACTGTCGAAATGCTACGATTATGCCACCGATTTTATCTACG 1348 ||||| || | |||||||| |||| |||||| |||| Sbjct 265796 TACCTCCGATTTACACGTCAC------------ACGA-----------ATTTTACGTACG 265760 Query 1349 ATGTTACAAACAAAGCCCCGAACTACTTAAGCTCTGTaaaaaaaCAATTAGAAACAGAGC 1408 || | |||| | ||| |||| |||||| | | ||||| || | |||||| Sbjct 265759 TTGCCATAAACGAGACCCAATCCTACATAAGCTAAGCACAAAAAAGCTTTGCAACAGATG 265700 Query 1409 TGTTGCCCGCAATGGAGAAAAGTATACAGTACGCGGCACAAGAATGTCCGGCGATGTGGA 1468 | || |||||| ||| || || || | |||| ||||||| ||||||| || Sbjct 265699 CATATCCAGCAATGATGAACGTTACACGGTTGGTAGCACGGGAATGTCAGGCGATGGTGA 265640 Query 1469 CACAGGCTTTGGAAATAGCATCATCAATTATTACATC 1505 ||| ||||| || || || ||||||| ||||||||| Sbjct 265639 CACCGGCTTCGGGAACAGTCTCATCAAATATTACATC 265603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6998277234942