Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq630 242 6e-62 seq993 201 2e-49 seq312 179 6e-43 seq899 102 1e-19 seq15 89.7 9e-16 >seq630 Length=172243 Score = 242 bits (268), Expect = 6e-62 Identities = 200/243 (82%), Gaps = 7/243 (3%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| ||||| ||||||||||||| | || | | Sbjct 17889 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGCCTAAACCCAGCTC-CATTGCAT 17831 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||| ||| ||||| |||||| |||||||||||||||| Sbjct 17830 ------GGGTGAACAATCCAACACTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 17777 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| |||||||||||||| ||||||||||||||||||| | | || |||||||||||| Sbjct 17776 ACATCAAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGACCGTCATAAGCCAGTTATC 17717 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||| |||||||||||||| ||||||| ||||| | | ||||||||||||| Sbjct 17716 CCTATGGTAACTTTTCTGACACCTCTTATTAAAAATTCCTTAAATCAAAAGGATCGATAG 17657 Query 270 GCC 272 ||| Sbjct 17656 GCC 17654 >seq993 Length=43966 Score = 201 bits (222), Expect = 2e-49 Identities = 190/241 (79%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| ||||| |||||||||| ||| | ||||| |||||||||||||| ||||||| || Sbjct 19294 CATTAGTAGCGTAAAACTAATCTGCCGCATGATGGTCTAAACCCAGCCCACGTTCGCTTG 19353 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | | |||||| ||||||| |||| | ||| |||||| ||||||| ||||||||| Sbjct 19354 CA-TAGGTGAAAAATCCAATGCTTGGTGTATTTTGCTTCACAATGATAGCAAGAGCCGAT 19412 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| |||||||||||||| ||| ||||||||||||||||| |||||||||||| || ||| Sbjct 19413 ATCAAAGGATCAAAAAGCTACGCCGCTATGAACGCTTGGCCGCCACAAGCCAGGTAACCC 19472 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||| |||||| ||| | |||| | |||| | | || |||||||||| |||| Sbjct 19473 AGTGTTAACTTCTCTAATATCTCTCGTTGCAAACTCGTTGAAACAAAAGGATCGACAGGC 19532 Query 272 C 272 | Sbjct 19533 C 19533 >seq312 Length=374451 Score = 179 bits (198), Expect = 6e-43 Identities = 164/206 (80%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| |||||||| ||||||| | |||||| | || | |||||||||||||||| || Sbjct 107807 GTCATTAGTAGGGTGAAACTAATCCGTCTCACGGTGGCCCAAACCCAGCTCACGTTTACT 107748 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | | |||||| ||||| |||| | || || || || |||||||||||||||| Sbjct 107747 -TGAATGGGTGCACAATTCAACATTCGTCGGGTTTTGTGTCACAATGATAGGAAGAGCCG 107689 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| || |||||| |||| ||||| | || |||| ||||| ||||||||||||||||| Sbjct 107688 ACATCAAAAGATCAATAAGCGACGTCACAATAAACGTTTGGCCGCCACAAGCCAGTTATC 107629 Query 210 CCTGTGGTAACTTTTCTGGCACCTCT 235 | |||||||||||||| | || |||| Sbjct 107628 CTTGTGGTAACTTTTCCGACAACTCT 107603 >seq899 Length=65883 Score = 102 bits (112), Expect = 1e-19 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| Sbjct 20637 ACCAAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGC 20578 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||| ||| ||| | ||| ||| | | ||| || ||||||||||||| | || Sbjct 20577 CCAACCCTTGGAACCAACTTCAGCTCCAGGATGC---GATGAGCCGACATCGAGGTGCCA 20521 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | | ||||| ||||||| ||||| | | |||| |||||||| ||||||||| Sbjct 20520 AACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGGGTAACTTT 20461 Query 224 T 224 | Sbjct 20460 T 20460 >seq15 Length=1977833 Score = 89.7 bits (98), Expect = 9e-16 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA--GCAACGTCGC 177 |||| | |||| ||||||| ||||||||||| | || |||||| || | |||||| Sbjct 1062576 AATTTTCCTTCACAATGATAGAAAGAGCCGACACCAAACGATCAACAATGGTGACGTCGG 1062517 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 || | ||||| ||||| |||| |||||||||||||| |||||| || |||| ||| Sbjct 1062516 CATTAGCGCTTCGCTGCAACAATTCAGTTATCCCTGTGTTAACTTCTCGCGCACATCT 1062459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854379537120