Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq821 311 3e-82 seq630 210 7e-52 seq142 176 1e-41 seq530 172 2e-40 seq338 105 2e-20 seq23 78.8 3e-12 >seq821 Length=99470 Score = 311 bits (344), Expect = 3e-82 Identities = 306/389 (79%), Gaps = 12/389 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||||||||||| ||||| | ||||||| Sbjct 43761 GTACTCATTCCAATTACAGGGCCTCGTATATGAGCCCTGTATTGTTATTTTTCGTCACTA 43702 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 43701 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 43642 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 43641 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 43582 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||| ||| ||||||||||||||||| ||||||| || ||| || Sbjct 43581 GTAGTCCTAAATACTACAATCAAAAGTTGATAGGGCAGACATTTGAAAGATATGTCGTCG 43522 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACCAAGGA----GCCCCGAAGG 292 | |||| |||| ||| || ||||||| || ||| | || | || |||| Sbjct 43521 GTACAAGACCATACGA-TCTGCAAGTTATCTAGAGTTCAACCAGTATACGACCAAAAAGG 43463 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA--GCATGT 349 || | | |||| |||||||| | | | |||| ||| | |||| || |||||| Sbjct 43462 TCGCTTGGTTTTAGCCTAATAAAAGCGCACGTTCCATTGGTCCGTGTTTATATTGCATGT 43403 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCA 378 |||||||||||||||||||| |||| ||| Sbjct 43402 ATTAGCTCTAGAATTACCACAGTTACCCA 43374 >seq630 Length=172243 Score = 210 bits (232), Expect = 7e-52 Identities = 284/397 (72%), Gaps = 39/397 (10%) Strand=Plus/Minus Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173 ||||||||||||||||||||| |||||||||||| || ||||||||||||| |||| || Sbjct 20635 AGCCGTTTCTCAGGCTCCCTCCCCGGAATCGAACACTGATTCCCCGTTACCGGTTGCAAC 20576 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 |||||||| || || || ||||| | ||||||||||||||| | ||||| || || Sbjct 20575 CATGGTAGTCCTAAATACTGCCATCAAGAGTTGATAGGGCAGACAGTTGAAAGATGTGTC 20516 Query 234 GCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT-CACCAAGGAGCCCCGAAGG 292 | | | |||| |||| |||| | ||||||| || | || |||| Sbjct 20515 GTCCGTACAAGACCATACGATCTGC-AAGTTATCTAGAGTTCAACAAG------------ 20469 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT---TAGCATGT 349 |||||| ||| | |||| | | | ||| | || | Sbjct 20468 -----------------AATAAAAGCACACGTTCCATTGGCCCGTGTTTACATTGCTCTT 20426 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATA 407 |||||||||||||||| || |||||||| ||| | || || ||| || ||| ||| Sbjct 20425 GTTAGCTCTAGAATTACTACAGTTATCCAGGTA--ACTGTTAACGATCTAAGGAACCATA 20368 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||| ||||||||| || || |||||||| | || | | | ||||||||||||||| Sbjct 20367 ACTGATATAATGAGCCTTTTGCGGTTTCACTTT-TAATTCGTGTGTACTTAGACATGCAT 20309 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| ||||||||||| Sbjct 20308 GGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 20272 >seq142 Length=613757 Score = 176 bits (194), Expect = 1e-41 Identities = 310/443 (70%), Gaps = 23/443 (5%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||| || |||||||| ||||||| |||||||| ||||| |||||||||||||| Sbjct 296887 TGGGTAATTTACGGGCCTGCTGTCTTCCTTCGATGTGGTCGCCGTCTCTCAGGCTCCCTC 296946 Query 135 TCCGGAATCGAACCCTAATTCCCCG-TTACCCGTTGATACCATGGTAGGCCACTATCCTA 193 |||||||||||||||| | || || ||| |||||| |||||||||| || |||| | Sbjct 296947 TCCGGAATCGAACCCTGACTCTTCGTTTATCCGTTGCAACCATGGTAGTCCTAAATCCGA 297006 Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCA----- 248 ||||| ||| || |||||| ||| ||||||| || || || || |||| ||| Sbjct 297007 CCATCAAAACTTAATAGGGTAGACATTTGAAAGATCCCTCATCGATGCAAGACCAGACGA 297066 Query 249 --TGCGATTCGT--TAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304 ||| | | || ||||| || ||| || || ||| || | | || | Sbjct 297067 TCTGCAAGTGGTCGAGAGTTA-GATCAATATCC---GATAAAAAAAGTTCGCTTGGTTGT 297122 Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT--TTAGCATGTATTAGCTCTAGAA 362 ||||| ||| ||| | || | | | | || | ||| ||||| |||||| || Sbjct 297123 AGTCTAACAAAAGCACACGTTTCATGGGCCATGATTACATTGCAGGTATTGGCTCTAAAA 297182 Query 363 TTACCACGGTTATCCATGTAGTAA--GGTA-CTATCAAATAAACGATAACTGATTTAATG 419 | ||| ||||||| | ||| | || | ||| || | || || |||| |||| Sbjct 297183 GTGCCATAATTATCCA---AATAACTGTTATCGATCTAAGGAGAGAAAAATGATGTAATA 297239 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||| || || |||||||| | || | | || |||||||| |||| || || |||| Sbjct 297240 AGCGTTTTGCGGTTTCACT-TTTAATTCGTGTACGCTTAGACAAGCATAGCGGAAGCTTT 297298 Query 480 GAGACAAGCATATGACTACTGGC 502 ||||||||||||| ||| ||||| Sbjct 297299 GAGACAAGCATATAACTGCTGGC 297321 >seq530 Length=221004 Score = 172 bits (190), Expect = 2e-40 Identities = 255/353 (72%), Gaps = 24/353 (7%) Strand=Plus/Plus Query 148 CCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGA 207 ||| |||||||||||||||||| |||| || || || ||||| |||||||| Sbjct 133806 CCTGATTCCCCGTTACCCGTTG--------GTAGTCCTAAATACTGCCATCAAAAGTTGA 133857 Query 208 TAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATT 267 ||||||||| ||||||| || | ||| ||| |||| |||| ||| | ||||||| Sbjct 133858 TAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATAAGATCTGC-AAGTTATC 133916 Query 268 ATGAATCA---CCA---AGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACC 321 || | | ||| | || | |||| || | | |||| |||||||| ||| Sbjct 133917 TAGACTTAAACCCATATACGATCAAA-AAGGTCGCTTGGTTTTAGCCTAATAAAAGCACA 133975 Query 322 CCTTCCGAAG-TCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCA 378 | |||| | || |||| || | || ||||||||||||||||||||| |||||||| Sbjct 133976 CGTTCCATTGGTCCATGTTTATATTGAATATATTAGCTCTAGAATTACCACAGTTATCCA 134035 Query 379 TGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 ||| | || || ||| || ||| |||||| || | ||||||| || ||||||||| Sbjct 134036 AGTA--ACTGTTAACGATCTAAGGAACCATAACTTATATGATGAGCCTTTTGCAGTTTCA 134093 Query 437 CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 || | || | | | |||||||||||||||||| |||||||||||||||||| Sbjct 134094 CT-TTTATTTCGTGTGTACTTAGACATGCATGGCATAATCTTTGAGACAAGCA 134145 Score = 77.0 bits (84), Expect = 1e-11 Identities = 75/96 (78%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| |||||| |||| | ||||||| Sbjct 133714 GTACTCATTCCAATTACAGGGCCTCGTATATGAGTACTGTATTGTAATTTTTCGTCACTA 133773 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||||| | |||| |||||||||| |||||||| Sbjct 133774 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTG 133809 >seq338 Length=361580 Score = 105 bits (116), Expect = 2e-20 Identities = 331/512 (65%), Gaps = 58/512 (11%) Strand=Plus/Plus Query 7 ATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| | || | | ||| | || || |||| ||||||| ||| | Sbjct 330071 ATTCCAATTACAGGGCCTCGTATATGAGGCGTGCATTGTCATTTTCCGTCACTATCTCAC 330130 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 || | |||| ||||||| || ||| | ||||||||||||| ||||| |||||| ||||| Sbjct 330131 CGAGGTGGGAGTGGGTAAGTTACGCTCGTGCTGCCTTCCTTAGATGTCGTAGCCTTTTCT 330190 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 | ||||||| |||| ||| ||| | Sbjct 330191 TTG----------CGGAATCTAACC--------------------------ATGATAGTC 330214 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 | || |||||||| || || ||||||||| || |||| || | || ||| ||| Sbjct 330215 CTAAATGCTACCATCAGAAATTATTAGGGCAGACATATGAAAGACCAGCCGTTGGCACAA 330274 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATC--ACCAAGGAGCCCCGAAGGGCGTTGGTT 301 | || | |||| | || |||| ||||| | ||| | | || || | | | Sbjct 330275 GACCGTACGATGTGCAAA-TTATACTGAATTTAATCAACAAA-----ATGGTCGCTTGGT 330328 Query 302 TTTTATCTAATAAAT--ACACCCCTTCCGAAG--TCGGGGTTTT-TAGCATGTATTAGCT 356 | | |||||||| |||| | ||| | ||| | || | | |||| |||||||| Sbjct 330329 TATAGCCTAATAAAAGCACACACGTTCAATTGCTTCGTGTTTATATTGCATATATTAGCT 330388 Query 357 CTAGAATTACCACGGTT----ATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||||| || || ||| ||||| ||||| || ||| || |||| ||||||| Sbjct 330389 CTAGACACAC-ACAGTTCCACATCCAAGTAGTTGTTAACGATCTAAGAAACCGTAACTGA 330447 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 | |||||| | || || || ||||| | || | | ||| | ||| || ||||||||| Sbjct 330448 TATAATGAACTTTTTGCGGTGTCACTTT-TAATTCGTGTATGCATAGCCAAGCATGGCTT 330506 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| | ||| |||||| Sbjct 330507 GATCTTTGAGACAAGCATACGGCTATTGGCAG 330538 >seq23 Length=1669947 Score = 78.8 bits (86), Expect = 3e-12 Identities = 108/149 (72%), Gaps = 14/149 (9%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || || || | || ||||||| ||| |||||||||||| ||||||| | ||||| Sbjct 1320092 TAACTTACGGTCCAGGTGTCTTCCTTAGATATGGTAGCCGTTTTTCAGGCTTTCGCTCCG 1320151 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 | |||||| | | | | ||||| |||||||| | || ||| | || |||| Sbjct 1320152 GGATCGAAACTTGA-TACCCGTCACCCGTTG---CAAT-------CACAA---TATCATC 1320197 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||||||| || | ||||||||||| || Sbjct 1320198 AAAAGTTGACAGCGTAGAAATTTGAAAGA 1320226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510363825920