Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1656 183 9e-42 seq1643 80.6 8e-11 >seq1656 Length=30388 Score = 183 bits (202), Expect = 9e-42 Identities = 229/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 2657 AAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTT 2716 |||| ||||| | | |||||||||||||| | || ||| | |||||||| || || Sbjct 26636 AAGGAATTGCTAATGAAGCTGCTAACTCAATTTTAATTAAATTGAACCAAATTGGGACAG 26577 Query 2717 TGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTAT 2776 | |||||||| |||| | || || | || || |||| |||| ||| |||| || | Sbjct 26576 TTACTGAAACAATTGATACAATTCAATTAGCACAAAAAGCAGGATGAACAACAGTTGTGT 26517 Query 2777 CACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACG 2836 |||| |||||||| ||||| |||||||||||||| |||||| | |||||||| || Sbjct 26516 CACATCGTTCAGGAGAAACCGAAGATTCAACAATTGCTGATTTAGCAGTTGCTTTAAATA 26457 Query 2837 CTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAAT 2896 ||||||||||||| || || ||||||| | |||||||||||| ||||| || | | Sbjct 26456 CTGGTCAAATTAAAACGGGAAGTATGTCACGAAGTGACCGTATTGCAAAATATAATCGTT 26397 Query 2897 TGCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGAATACCGTGGTTTGAAATCATTCT 2956 | | || ||||| || | || |||||| ||||| ||| | ||| |||||| Sbjct 26396 TATTAGCAATTGAAGATGAATTAGGAACAGTTGCTGAATATGATGGAATTAAAACATTCT 26337 Query 2957 ACAACTTGAAAAAA 2970 | || ||||||||| Sbjct 26336 ATAATTTGAAAAAA 26323 Score = 145 bits (160), Expect = 2e-30 Identities = 400/610 (66%), Gaps = 6/610 (1%) Strand=Plus/Minus Query 1697 GTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAATCTG 1756 ||||||| |||| ||||| ||||| ||||| || |||| ||||||| || |||| || Sbjct 27647 GTGAAGTAATTGATTCACGAGGTAATCCAACTGTTCAAGTTGAAGTTTGAACAGAATTTG 27588 Query 1757 GTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAG 1816 | | || ||| | ||||| || |||||||| ||||| || | |||||| ||| Sbjct 27587 GAGGATATGGTTCAGCGATGGTACCATCAGGAGCTTCAACCGGAAGTCGTGAAGCATTAG 27528 Query 1817 AACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGATA 1876 || | | |||||||| |||| |||||| || || |||||| || ||| Sbjct 27527 AATTAAGGGATGGTGATAAAGGACGTTACCAAGGGAAAGGCGTCTTAAAAGCTGTCAATA 27468 Query 1877 ACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTACGTGATCAACAAGGTA 1936 | || || | ||||| || | | | ||| | || | | ||||||| | | Sbjct 27467 ATGTTAATACAAAAATTGCCGAAGAACTTGTTGGAATGGAAGCAACTGATCAAGTTGCAA 27408 Query 1937 TTGACCGCGCAATGATCGCTCTTGACGGTAC---TCCAAACAAAGGTAAACTTGGTGCCA 1993 |||| |||||||| ||| | || || || | || |||| || | || || | Sbjct 27407 TTGATAAAGCAATGATTGCTTTAGATGGGACAGATTTTAA-AAAG--AATTTAGGAGCTA 27351 Query 1994 ACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTC 2053 | || || | || || || || || || || ||||| ||| | ||||| | | Sbjct 27350 ATGCAATGTTAGGAGTTTCAATGGCGGTTGCTAAAGCAGCAGCTTGTGAAGTTGAATTAC 27291 Query 2054 CACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACA 2113 || | || | ||||| || ||| | ||| ||||| || ||| |||||| | |||| Sbjct 27290 CATTATATAAGTACCTAGGAGGAGTTAACGCTAAAAAACTACCAGTGCCAATGTTAAACA 27231 Query 2114 TCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTAC 2173 | || || || || || | || | |||| | ||||||||||||||||||| | | Sbjct 27230 TTATTAATGGGGGAGAACATGCTGATAGTGCAATTGATTTCCAAGAATTTATGATTATGC 27171 Query 2174 CTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGC 2233 | | ||| |||||||| || ||||||||| | || || | | ||||| ||||| | Sbjct 27170 CAGTTGGAGCACCAACTTTTAAAGAAGCGTTACGATGAGCATCAGAAATTTTCCATACAT 27111 Query 2234 TTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCG 2293 | || |||||| | | || ||| | || || || ||||| ||||| || || | Sbjct 27110 TAAAAAAAATCTTACATGATAAAGGAGATATTACTGCTGTTGGTGATGAAGGGGGATTTG 27051 Query 2294 CACCTCGTTT 2303 |||| | ||| Sbjct 27050 CACCGCATTT 27041 >seq1643 Length=101617 Score = 80.6 bits (88), Expect = 8e-11 Identities = 160/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 2676 TGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGC 2735 |||||| || || | || ||| ||||| || || |||| || ||||| || | | Sbjct 101129 TGCTAATTCTATTTTAATTAAACCCAACCAGATTGGCTCTTTAACAGAAACATTAAAAGT 101188 Query 2736 TATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAAC 2795 ||| |||| || ||| |||| ||||| | | | | ||||| || || || ||||| Sbjct 101189 AATCAAAATTGCTAAACAAGCAGGATATTCCACTATCATTTCACATCGATCTGGAGAAAC 101248 Query 2796 TGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGG 2855 ||||||| || || || || | |||||| ||| | || |||||||| || || Sbjct 101249 TGAAGATGTTACGATAGCAGACTTATCAGTTGGAACAGCATCAGGACAAATTAAAACGGG 101308 Query 2856 TTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 || || || | || ||||| || ||||| || |||| ||||||| ||||| Sbjct 101309 CTCTATGAGCCGATCGGATCGTATAGCAAAATATAATAGATTGATTCGTATTGAAGA 101365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156033962170380