Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_032146.1 Length=1477 Score E Sequences producing significant alignments: (Bits) Value seq13 154 1e-34 >seq13 Length=2084103 Score = 154 bits (170), Expect = 1e-34 Identities = 457/685 (67%), Gaps = 20/685 (3%) Strand=Plus/Minus Query 276 TAAATGATGTCTTTCAGGAGGATCTTCCAATCTGGAGTTCATCACCTGGGCTTCCATGGA 335 |||||||||| | | || | || || || |||| | |||| |||||| | | ||| Sbjct 1203984 TAAATGATGTTTGTAAGCAAGACCTGCCTATCTAGTCATCATAACCTGGATTGCACTGGT 1203925 Query 336 TGCAATGCGGATATAGAACAAAGAATGACATTCGTCGCGACCCCGACGCGATCAACCGCA 395 ||| || |||||||| |||||||| | | ||||| | || ||||| | Sbjct 1203924 CACAACTCGTTTATAGAACTAAGAATGATGTCAGAAAAGACCCACATGCTATCAATAAGA 1203865 Query 396 TTAGGCACTTCTGGCATAGAATTAAA-TGTTTCGAAGA-AGTACATCTACCGGACT-GTT 452 ||| ||| |||||||| | || |||| || ||| | | ||| |||||| || | | Sbjct 1203864 TTATGCATTTCTGGCAAAAAAATAAAATGCGATGAAAATATTAC-TCTACCCGAGAAGCT 1203806 Query 453 GTGCATATGTGCGTACACATAT-TGTTGAGCGTGGCGAGACAAAAGTCCGTGCAGTGTGG 511 |||| |||||| || || |||| | || | || | | |||||||||||||| || ||| Sbjct 1203805 GTGCGTATGTGAGTTCATATATATACAGATCTTGCCAA-ACAAAAGTCCGTGCTGTCTGG 1203747 Query 512 GGTTATCCGGCAACGGTGACCTTTGGCGAAGCAGTATTTGCACTCCCCCTGATTCAAGCG 571 || ||||| ||||| || || ||||| |||| | ||||||||| || || |||| || Sbjct 1203746 GGGTATCCAGCAACCGTCACTTTTGGAGAAGAGGCATTTGCACTACCGCTTATTCGTGCA 1203687 Query 572 TAT-AAGAAGGGAGGATATCCTATTGCATATGGATTTGAGACCGGCAACGCTGGTTGTAA 630 ||| || || | || ||| |||| ||||| ||||| ||||| ||||| | || Sbjct 1203686 TATGAACAACATA-GAACCCCTCTTGCCTATGGTTTTGAAACCGG---AGCTGGAGGAAA 1203631 Query 631 -GAAGATGTTCCATGGTATGAAGGGCAACCACTACCTTGGAATTGATTTCACCAGTTTTG 689 ||| || ||| || | | || ||| | | | | ||||||||||| | | ||| Sbjct 1203630 CGAATAT-TTCAATCATCT-AAAGGCTTTCGATTCTTAGGAATTGATTTTAAGAAACTTG 1203573 Query 690 ATAAGACCCTTCCACCATGGCTGGTCTCCACG--GCCTTTGACATACTGGCCTATAACAT 747 ||||| | | ||| | ||||| | | | | || ||||| | | ||| | || | Sbjct 1203572 ATAAGTCATTACCAGCTTGGCT--TATTGAAGTTGCATTTGATACATTGG-TTGCAAATT 1203516 Query 748 TGATTTTCTA-CACTATCGAGATCACGGAATTGCTCGTGTCAAATCAATGGTCCATATGT 806 | | |||| | | ||| |||||| ||| | | | | | | | |||| Sbjct 1203515 TAAATTTCAAGAAGTATGAAGATCATGGAGTCCCAATACTTAGAAGCTTAATTAGGATGT 1203456 Query 807 TTAACGTTATTAAGGATTACGCCATTAACACGAAAATACGCATGTGTAATGGAGAAAGAT 866 || | ||| | ||| | || || || || || || | ||| | ||||| ||| | | Sbjct 1203455 TTCAAGTTGTGAAGAAGTATTGAATAAATACTAATATCCAGATGAGCAATGGTGAACGTT 1203396 Query 867 ATATAAAGAAAAGTGGTCTTGCAAGTGGAAGTTACTTTACACAGCTTGTTGGCAGTGTTT 926 |||| || | | | | | || ||||| ||||| |||||||| ||||| || || ||| Sbjct 1203395 ATATGAAAAGATCCGATTTAGCTAGTGGTAGTTATTTTACACAACTTGTAGGGAGCATTT 1203336 Query 927 GTAACTACCTGCTCCTTACTTATGC 951 |||||||| | |||||||||||||| Sbjct 1203335 GTAACTACGTTCTCCTTACTTATGC 1203311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4617482496510