Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq16716 147 4e-33 seq10822 145 1e-32 seq11308 134 3e-29 seq20595 87.8 3e-15 >seq16716 Length=1028 Score = 147 bits (162), Expect = 4e-33 Identities = 210/287 (73%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||||| | |||| | | ||| | || |||||||||| ||||||||||| | Sbjct 637 ATGCTCTTCATCGAGTGTTGTTGTGGGCCGGTACAATTACTTTGAACAAATTAGAGTGCT 696 Query 99 CAAAGCAGGCCTT---TGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| |||| ||||| || |||||||||||| |||| ||| | | | Sbjct 697 TAAAGCAGGCTCCAAATGCTTGAATATTTTGTGCATGGAATAATGAAATAAGACCT-CTG 755 Query 155 TTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTC-GGGGGTG 211 ||||| ||| ||||||| ||| | | |||||||||||||| ||| ||||| Sbjct 756 TTCTACTTTCATTGGTTTTTAGATCAAGAGGTAATGATTAATAGAAGCAGTTTGGGGGCA 815 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | |||||| | |||||||||||||||||| |||||||||| |||||| Sbjct 816 TTAGTATTACGACGCGAGAGGTGAAATTCTTGGACCGTCGTAAGACTAACTTAAGCGAAA 875 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || || |||| ||||||||||||||||| ||||||||||||| || Sbjct 876 GCATTTGCCAAAGATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 921 >seq10822 Length=1141 Score = 145 bits (160), Expect = 1e-32 Identities = 210/288 (73%), Gaps = 10/288 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||||| | |||| | | ||| | || |||||||||| ||||||||||| | Sbjct 972 ATGCTCTTCATCGAGTGTTGTTGTGGGCCGGTACAATTACTTTGAACAAATTAGAGTGCT 913 Query 99 CAAAGCAGGCCTT---TGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| |||| ||||| || |||||||||||| |||| ||| | | | Sbjct 912 TAAAGCAGGCTCCAAATGCTTGAATATTTTGTGCATGGAATAATGAAATAAGACCT-CTG 854 Query 155 TTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTC--GGGGGT 210 ||||| ||| ||||||| ||| | | |||||||||||||| ||| ||||| Sbjct 853 TTCTACTTTCATTGGTTTTTAGATCAAGAGGTAATGATTAATAGAAGCAGTTTTGGGGGC 794 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | |||||| | |||||||||||||||||| |||||||||| ||||| Sbjct 793 ATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACCGTCGTAAGACTAACTTAAGCGAA 734 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || |||| ||||||||||||||||| ||||||||||||| || Sbjct 733 AGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 687 >seq11308 Length=1333 Score = 134 bits (148), Expect = 3e-29 Identities = 207/287 (72%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||||| | |||| | | ||| | || |||||||||| ||||||||||| | Sbjct 761 ATGCTCTTCATCGAGTGTTGTTGTGGGCCGGTACAATTACTTTGAACAAATTAGAGTGCT 820 Query 99 CAAAGCAGGCCTTT---GCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| ||| |||| || |||||||||||| |||| ||| | | | Sbjct 821 TAAAGCAGGCTCCAAACGCTTCAATATTTTGTGCATGGAATAATGAAATAAGACCT-CTG 879 Query 155 TTCTATTTTG-TTGGTTTCTAGGACCGCCG-TAATGATTAATAGGGATAGTC-GGGGGTG 211 ||||| ||| ||||||| ||| | | ||||||||||||| ||| |||||| Sbjct 880 TTCTACTTTCATTGGTTTTTAGATCAAGAGCTAATGATTAATAGAAGCAGTTTGGGGGTA 939 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | |||||| | |||||||||||||||||| || ||||||| |||||| Sbjct 940 TTAGTATTACGACGCGAGAGGTGAAATTCTTGGACCGTCGTAACACTAACTTAAGCGAAA 999 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || || |||| ||||||||||||||||| ||||||||||||| || Sbjct 1000 GCATTTGCCAAAGATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 1045 >seq20595 Length=1158 Score = 87.8 bits (96), Expect = 3e-15 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 185 AATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||| ||| ||||| | |||||| | |||||||||||||||| Sbjct 1 AATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTG 60 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 || |||||||||| |||||||| || |||| ||||||||||||||||| | Sbjct 61 GACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AG 119 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 120 AACGAAAGTTAGAGG 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914979702208