Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq6689 194 3e-47 seq19851 174 3e-41 seq8544 172 9e-41 seq16647 165 1e-38 seq307 140 6e-31 seq9986 138 2e-30 seq6249 105 1e-20 seq22241 84.2 4e-14 seq20509 78.8 2e-12 seq5632 78.8 2e-12 >seq6689 Length=136539 Score = 194 bits (214), Expect = 3e-47 Identities = 189/242 (78%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| |||||||||||||||| |||| || |||||||||||||||||||| |||| || Sbjct 79167 GTCATTAGTAGGGTAAAACTAATCTGTTTCGCGACGGTCTAAACCCAGCTCATGTTCACT 79226 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || || ||||| | |||||||||| || |||||| ||||||| |||| ||| Sbjct 79227 TGTA-TGAGTGAATAGTCCAACGCTTGGTTTATCGTGCTTCACAATGATAGCAAGAACCG 79285 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 | ||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| Sbjct 79286 ATATCAAAGGATCAAAAAGCTGTGCCGCTATGAACGCTTGGCCGCCACAAGCCAATTATC 79345 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 || ||| |||||| ||| || |||| | ||| | | | | |||| |||||||| Sbjct 79346 CCAGTGCTAACTTCTCTAGCGTCTCTCGTTAAAAACTCCTTGAACCAAAAGAATCGATAG 79405 Query 270 GC 271 || Sbjct 79406 GC 79407 >seq19851 Length=6034 Score = 174 bits (192), Expect = 3e-41 Identities = 108/116 (93%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 5096 AATTTTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCGACGTCGCTA 5155 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5156 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT 5211 >seq8544 Length=65021 Score = 172 bits (190), Expect = 9e-41 Identities = 127/148 (86%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 61664 TGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCGACGTCGCTATGAAC 61723 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||| Sbjct 61724 GCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGTTAAAAA 61783 Query 245 TTTCGAGGGACTAAAGGATCGATAGGCC 272 | | | |||||||||||||||| Sbjct 61784 CTCCTTAAACCAAAAGGATCGATAGGCC 61811 >seq16647 Length=45078 Score = 165 bits (182), Expect = 1e-38 Identities = 155/196 (79%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 || || |||||||||||||||| | | | | || ||||||||||||||||| ||| Sbjct 43457 GTTATTAGTAGGGTAAAACTAATCCCTTCCCCGGTGGCTTAAACCCAGCTCACGTTTCCT 43516 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || ||| |||||||||||| |||| | || || |||| |||||||||||||||| Sbjct 43517 TGTA-TGGATGAACAATCCAATGCTTGATGGGTTTTGTTTCGAAATGATAGGAAGAGCCG 43575 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| ||| |||| ||||| ||||| ||||||||||| || |||||||| ||||||| Sbjct 43576 ACATCAAAGAATCAGAAAGCGACGTCACTATGAACGCTCGGTCGCCACAAGTCAGTTATA 43635 Query 210 CCTGTGGTAACTTTTC 225 || || ||||||||| Sbjct 43636 ACTATGCTAACTTTTC 43651 >seq307 Length=55487 Score = 140 bits (154), Expect = 6e-31 Identities = 160/215 (74%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||| || ||| ||| |||||||||||||||||||||||||||||| || || Sbjct 55040 GTCATTAGTAGAGTGAAATTAATCTGTCTCATGACGGTCTAAACCCAGCTCACATTGACT 55099 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || |||||||| | || |||| || | ||| |||||| ||||||| |||| || Sbjct 55100 TGTA-TGGGTGAATAGTCTAACGGTTGGAGTATTTTGCTTCACAATGATAGCAAGAACCC 55158 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 | ||| | || ||| |||| |||| ||||||| ||||||||||| ||||| Sbjct 55159 ATATCAACCCAT---------ACGACGCTCTGAAGGCTTGGCCGCCACAAGCCAATTATC 55209 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 || ||| ||| || ||| |||||| | ||||| Sbjct 55210 CCAGTGATAATTTCTCTAATACCTCTTGAATCAAA 55244 >seq9986 Length=1555 Score = 138 bits (152), Expect = 2e-30 Identities = 140/187 (75%), Gaps = 24/187 (13%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| | ||||||||||||||||||||||| |||||||||||| |||| || ||||||| Sbjct 1423 TCATTAATAGGGTAAAACTAACCTGTCTCAGGACGGTCTAAACTCAGCCCATGTTCCCT- 1365 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | || ||||| |||||||||||| || || ||||||| ||||||| Sbjct 1364 TGCGTCTGTGAAAAATCCAACGCTTGGGGATTTTTGCTTCGCAATGATAG---------- 1315 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||| ||||||||||||| ||||||| | |||||||||||||||| Sbjct 1314 -------------CAAAGCGACGTCGCTATGAAAGCTTGGCCGTCACAAGCCAGTTATCC 1268 Query 211 CTGTGGT 217 ||||||| Sbjct 1267 CTGTGGT 1261 >seq6249 Length=19793 Score = 105 bits (116), Expect = 1e-20 Identities = 61/63 (97%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1 GTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 60 Query 233 TCT 235 ||| Sbjct 61 TCT 63 >seq22241 Length=88292 Score = 84.2 bits (92), Expect = 4e-14 Identities = 91/117 (78%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCT-GTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 ||||| |||| ||||||||||| || ||| ||||||| ||||| ||||||||||| ||| Sbjct 45738 GTCATTAGTATGGTAAAACTAATCTTGTCCCATGACGATCTAA-CCCAGCTCACGCCCCC 45796 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 | | || | | ||||||| ||||| ||||| ||||| |||||||||||| Sbjct 45797 T-TGCTTGAATAACCAATCCAGCGCTTGGTGAATTTTGCTTTACAATGATAGGAAGA 45852 >seq20509 Length=13571 Score = 78.8 bits (86), Expect = 2e-12 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT-TCCCTATTAGTGGGTGAAC 103 |||| | |||||||| |||| |||||||||| ||||||| || || ||| | || |||| Sbjct 10596 AAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTATCACT-TTAATCGGCGAAC 10538 Query 104 AATCCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 | | ||| ||| ||| ||| || | | ||| || ||| ||||||||| | Sbjct 10537 AGCCGAACCCTTGGGACCTTCTTCAGCCCCAGGATGT---GATGAGTCGACATCGAGGTG 10481 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 |||| | |||||||||||||||| | ||| |||| |||||||| | ||| | Sbjct 10480 CCAAACGGTGTCGTCGCTATGAACGCTCGAACACCATCAGCCTGTTATCCCCGGCGTACC 10421 Query 221 TTTT 224 |||| Sbjct 10420 TTTT 10417 >seq5632 Length=30673 Score = 78.8 bits (86), Expect = 2e-12 Identities = 81/105 (77%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 26 GACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTT 85 ||| ||||||| | ||||||||||||| ||| | |||| |||||||| |||| |||| Sbjct 18397 GACTGTCATCAAATGCGTAAAACTAACCTCTCTTACGACGATCTAAACCTAGCTTGCGTT 18338 Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| | ||||||||||||||| | ||| |||| |||||| Sbjct 18337 GCCT-TGCATGGGTGAACAATCCAGCACTTGATGAATGTTGCTTC 18294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854194337376