Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq20595 158 2e-36
seq22330 149 1e-33
seq17123 122 2e-25
seq868 109 1e-21
seq3760 107 4e-21
seq10822 104 4e-20
>seq20595
Length=1158
Score = 158 bits (174), Expect = 2e-36
Identities = 171/223 (77%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 662 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 720
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| || ||||| || || ||| | ||| ||||| |||||| | | || |
Sbjct 721 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 778
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 779 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 837
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||||| | | ||| |||||||||||||||| |||||||
Sbjct 838 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCTCTTTGTA 880
>seq22330
Length=3167
Score = 149 bits (164), Expect = 1e-33
Identities = 169/223 (76%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 908 AGATTGAG-CAATAACAGATCTGTGATGCCCTTAGATGTGTTGGGCTGCACGCGCGCTAC 966
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| || ||||| || || ||| | ||| ||||| |||||| | | || |
Sbjct 967 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 1024
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 1025 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 1083
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||||| | | ||| |||||||||||||||| |||||||
Sbjct 1084 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCTCTTTGTA 1126
>seq17123
Length=12358
Score = 122 bits (134), Expect = 2e-25
Identities = 165/225 (73%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163
|||||| ||| ||||||||| |||||||| ||||||||||| || ||| |||||||||||
Sbjct 10330 GAAGTT-GAG-CAATAACAGATCTGTGATACCCTTAGATGTCCTCGGCTGCACGCGCGCT 10387
Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223
|| ||| || |||| || || ||| | || | |||||||||| || | ||
Sbjct 10388 GCAATGAAAGTATTAACGGGT--ATTTCCTGGAACGAGATGTCTGGGTAAACTGCTGAAG 10445
Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283
| | || |||| ||||| | | | | || | || | | | ||| |||| |||||||
Sbjct 10446 CATTTTCATGCTTGGGATTGTGAACGGGAAGTGTT-CACATGAACTTGGAACTCCTAGTA 10504
Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| | | ||||| | | ||| ||||||| |||||||| |||||||
Sbjct 10505 AGTGTGAGTCATAAACTCGCTTTGATTATGTCCCTGCTCTTTGTA 10549
>seq868
Length=117772
Score = 109 bits (120), Expect = 1e-21
Identities = 159/223 (71%), Gaps = 15/223 (7%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 24102 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTA- 24159
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
||||| || || ||| | ||| ||||| |||||| | | || |
Sbjct 24160 ----------TCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCACTGAACCG 24207
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 24208 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CCCATGAACTTGGAATTCCCAGTAAG 24266
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | |||| | | ||| |||||||| |||| |||||||
Sbjct 24267 TGTGAATCATTAACTCGCATTGATTACACGCCTGTTCTTTGTA 24309
>seq3760
Length=132572
Score = 107 bits (118), Expect = 4e-21
Identities = 158/220 (72%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| ||||||||||||||||||| | |||||||| |||||| |||||||| ||||
Sbjct 51406 TTGAG-CAATAACAGGTCTGTGATGACATTAGATGTCCTGGGCTGCACGCGCCCTACCAC 51464
Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228
|| | ||||| || || ||| | ||| ||| | ||||| | | |||| ||
Sbjct 51465 GAATGTATCAACGTGT--ATTTCCTCGACCGAGAGGCCCAGGTAAGCCGCTGAAACGCTT 51522
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
|| |||| | ||| | |||| || | || | | | ||| ||| | || |||||| |
Sbjct 51523 TCATGCTTGAGATTGCCAATTGAAACT-TTTCACATGAACTTGGAGTTCCCAGTAAGTGT 51581
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| | | ||| |||||||||| ||||| || ||||
Sbjct 51582 GAGTCATTAACTCGCATTGATTACGTGCCTGCTCTCTGTA 51621
>seq10822
Length=1141
Score = 104 bits (114), Expect = 4e-20
Identities = 89/108 (82%), Gaps = 3/108 (3%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 158 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 100
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213
| ||| || ||||| || || ||| | ||| ||||| ||||||
Sbjct 99 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAA 54
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946971999488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |