Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq20595 158 2e-36 seq22330 149 1e-33 seq17123 122 2e-25 seq868 109 1e-21 seq3760 107 4e-21 seq10822 104 4e-20 >seq20595 Length=1158 Score = 158 bits (174), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 662 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 720 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 721 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 778 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 779 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 837 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||| ||||||| Sbjct 838 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCTCTTTGTA 880 >seq22330 Length=3167 Score = 149 bits (164), Expect = 1e-33 Identities = 169/223 (76%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 908 AGATTGAG-CAATAACAGATCTGTGATGCCCTTAGATGTGTTGGGCTGCACGCGCGCTAC 966 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 967 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 1024 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 1025 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 1083 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||| ||||||| Sbjct 1084 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCTCTTTGTA 1126 >seq17123 Length=12358 Score = 122 bits (134), Expect = 2e-25 Identities = 165/225 (73%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163 |||||| ||| ||||||||| |||||||| ||||||||||| || ||| ||||||||||| Sbjct 10330 GAAGTT-GAG-CAATAACAGATCTGTGATACCCTTAGATGTCCTCGGCTGCACGCGCGCT 10387 Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223 || ||| || |||| || || ||| | || | |||||||||| || | || Sbjct 10388 GCAATGAAAGTATTAACGGGT--ATTTCCTGGAACGAGATGTCTGGGTAAACTGCTGAAG 10445 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | | || |||| ||||| | | | | || | || | | | ||| |||| ||||||| Sbjct 10446 CATTTTCATGCTTGGGATTGTGAACGGGAAGTGTT-CACATGAACTTGGAACTCCTAGTA 10504 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | | ||||| | | ||| ||||||| |||||||| ||||||| Sbjct 10505 AGTGTGAGTCATAAACTCGCTTTGATTATGTCCCTGCTCTTTGTA 10549 >seq868 Length=117772 Score = 109 bits (120), Expect = 1e-21 Identities = 159/223 (71%), Gaps = 15/223 (7%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 24102 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTA- 24159 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 24160 ----------TCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCACTGAACCG 24207 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 24208 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CCCATGAACTTGGAATTCCCAGTAAG 24266 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | |||| | | ||| |||||||| |||| ||||||| Sbjct 24267 TGTGAATCATTAACTCGCATTGATTACACGCCTGTTCTTTGTA 24309 >seq3760 Length=132572 Score = 107 bits (118), Expect = 4e-21 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| ||||||||||||||||||| | |||||||| |||||| |||||||| |||| Sbjct 51406 TTGAG-CAATAACAGGTCTGTGATGACATTAGATGTCCTGGGCTGCACGCGCCCTACCAC 51464 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 || | ||||| || || ||| | ||| ||| | ||||| | | |||| || Sbjct 51465 GAATGTATCAACGTGT--ATTTCCTCGACCGAGAGGCCCAGGTAAGCCGCTGAAACGCTT 51522 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 || |||| | ||| | |||| || | || | | | ||| ||| | || |||||| | Sbjct 51523 TCATGCTTGAGATTGCCAATTGAAACT-TTTCACATGAACTTGGAGTTCCCAGTAAGTGT 51581 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| | | ||| |||||||||| ||||| || |||| Sbjct 51582 GAGTCATTAACTCGCATTGATTACGTGCCTGCTCTCTGTA 51621 >seq10822 Length=1141 Score = 104 bits (114), Expect = 4e-20 Identities = 89/108 (82%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 158 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 100 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 | ||| || ||||| || || ||| | ||| ||||| |||||| Sbjct 99 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946971999488