Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11308 322 1e-85 seq16716 248 3e-63 seq21503 118 3e-24 seq18987 113 1e-22 seq792 96.9 1e-17 >seq11308 Length=1333 Score = 322 bits (356), Expect = 1e-85 Identities = 376/495 (76%), Gaps = 27/495 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 ||||||||||| |||||| | || | | ||| |||||| ||||| | ||||||| Sbjct 483 GTACTCATTCCGATTACAGGGCCTCGTATATGAGTCCTGTACTGTTATTTTTCGTCACTA 424 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 ||||| || | |||| |||||||||| ||||||||||||||||||| ||||||||| || Sbjct 423 CCTCCACGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAACC 364 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| Sbjct 363 GTTTCTCAGGCTCCCTCTCCGGAATCGATCCCTAATTCCCCGATACCCGTTGCAACCATG 304 Query 178 GTAGGCC--ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 |||| || |||| |||||||| ||||||||||||||||| |||| | || | || Sbjct 303 GTAGTCCTAACTA--CTACCATCAAAAGTTGATAGGGCAGACATTTACAAGATCTGGCGT 246 Query 236 CGGCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACCAAGGA----GCCCCGAA 290 ||| |||| |||| || || ||||||| || ||| | || | || || Sbjct 245 CGGTACAAGACCATATGA-TCTGCAAGTTATCTAGAGTTCAACCAGTATACGACCAAAAA 187 Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA--GCAT 347 || || | | |||| |||||||| ||| | |||| ||| | |||| || |||| Sbjct 186 GGTCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCATTGGTCCGTGTTTATATTGCAT 127 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGA 405 |||||||||||||||||||||| |||||||| ||| | || || ||| || ||| | Sbjct 126 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCA 69 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||| ||||||||| || || |||||||| | || ||| | | |||||| Sbjct 68 TAACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTA-ATTCGT-----GTGTACATGC 16 Query 466 ATGGCTTAATCTTTG 480 ||||||||| ||||| Sbjct 15 ATGGCTTAACCTTTG 1 >seq16716 Length=1028 Score = 248 bits (274), Expect = 3e-63 Identities = 264/341 (77%), Gaps = 13/341 (4%) Strand=Plus/Minus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 339 TTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCC 280 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 ||||||||||| |||||||||| || || |||||||| ||||||||||||||||| | Sbjct 279 GTTACCCGTTGCAACCATGGTAGTCCTAAATACTACCATCAAAAGTTGATAGGGCAGACA 220 Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACC 277 |||||| || | ||| ||| |||| |||| ||| || ||||||| || ||| | Sbjct 219 TTTGAAAGATCTGTCGTCGGTACAAGACCATACGA-TCTGCAAGTTATCTAGAGTTCAAC 161 Query 278 AAGGA----GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGT 332 || | || |||| || | | |||| |||||||| ||| | |||| || Sbjct 160 CAGTATACGACCAAAAAGGTCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCATTGGT 101 Query 333 CGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT- 389 | | |||| || |||||||||||||||||||||||||| | |||||| ||| | || Sbjct 100 CCGTGTTTATATTGCATGTATTAGCTCTAGAATTACCACAGATATCCAAGTA--ACTGTT 43 Query 390 -ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 || ||| || ||| ||||||||| ||||||||| || || Sbjct 42 AACGATCTAAGGAACCATAACTGATATAATGAGCCTTTTGC 2 >seq21503 Length=423117 Score = 118 bits (130), Expect = 3e-24 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||| || | |||||||||||||| |||||||| | ||||||||||||||||||| || Sbjct 76084 AATTTACGGGGCTGCTGCCTTCCTTCGATGTGGTTGTCGTTTCTCAGGCTCCCTCTGCGA 76143 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||| |||| |||||| ||||| ||| |||||| || Sbjct 76144 AATCGAACCCTGATTCTTCGTTACTCGTTGCAACCGTGGTAGTCC 76188 >seq18987 Length=114623 Score = 113 bits (124), Expect = 1e-22 Identities = 103/129 (80%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197 |||||||||||||||||||| |||||| |||| |||||||||| || || ||| ||| Sbjct 95086 GGAATCGAACCCTAATTCCCTGTTACCTTTTGAAACCATGGTAGTCCTAAATACTATCAT 95027 Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCG 257 | ||| ||||| ||||||| ||||||| || | |||| ||| |||| | || ||| ||| Sbjct 95026 CAAAAATTGATGGGGCAGACATTTGAAAGATCTATCGTCGGTACAAGACGATACGA-TCG 94968 Query 258 TTAAGTTAT 266 ||||||| Sbjct 94967 GCAAGTTAT 94959 >seq792 Length=25733 Score = 96.9 bits (106), Expect = 1e-17 Identities = 119/161 (74%), Gaps = 14/161 (9%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||||||||| | ||||| ||| |||| || ||||| || | ||| Sbjct 22453 GCATGTATTAGCTCTAGAGTGACCACTGTTTTCCAGGTC-TAAGGGACCGT------AAC 22401 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 || || ||||||||| || || || ||||| | || | | ||||| ||| | Sbjct 22400 GA------ATATAATGAGCCTTTTGCGGTATCACTTT-TAATTCGTGTATACATAGTTGT 22348 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||| |||||||||| || || |||||| Sbjct 22347 GCATGGCTTAATCTTTGTGACAAGCATACGAATATTGGCAG 22307 Score = 95.1 bits (104), Expect = 4e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||| ||||| |||| ||||||| || | |||||||||||||| Sbjct 22685 TATTTTTCGTCACTACCTCACCGTGCTGGGAGTGGGTAAGTTATGTGCCTGCTGCCTTCC 22626 Query 103 TTGGATGTGGTAGCCGTTTCTC 124 || ||||| ||||||||||||| Sbjct 22625 TTAGATGTCGTAGCCGTTTCTC 22604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510036431616