Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq11308 322 1e-85
seq16716 248 3e-63
seq21503 118 3e-24
seq18987 113 1e-22
seq792 96.9 1e-17
>seq11308
Length=1333
Score = 322 bits (356), Expect = 1e-85
Identities = 376/495 (76%), Gaps = 27/495 (5%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57
||||||||||| |||||| | || | | ||| |||||| ||||| | |||||||
Sbjct 483 GTACTCATTCCGATTACAGGGCCTCGTATATGAGTCCTGTACTGTTATTTTTCGTCACTA 424
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
||||| || | |||| |||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 423 CCTCCACGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAACC 364
Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 363 GTTTCTCAGGCTCCCTCTCCGGAATCGATCCCTAATTCCCCGATACCCGTTGCAACCATG 304
Query 178 GTAGGCC--ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235
|||| || |||| |||||||| ||||||||||||||||| |||| | || | ||
Sbjct 303 GTAGTCCTAACTA--CTACCATCAAAAGTTGATAGGGCAGACATTTACAAGATCTGGCGT 246
Query 236 CGGCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACCAAGGA----GCCCCGAA 290
||| |||| |||| || || ||||||| || ||| | || | || ||
Sbjct 245 CGGTACAAGACCATATGA-TCTGCAAGTTATCTAGAGTTCAACCAGTATACGACCAAAAA 187
Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA--GCAT 347
|| || | | |||| |||||||| ||| | |||| ||| | |||| || ||||
Sbjct 186 GGTCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCATTGGTCCGTGTTTATATTGCAT 127
Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGA 405
|||||||||||||||||||||| |||||||| ||| | || || ||| || ||| |
Sbjct 126 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCA 69
Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465
|||||||| ||||||||| || || |||||||| | || ||| | | ||||||
Sbjct 68 TAACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTA-ATTCGT-----GTGTACATGC 16
Query 466 ATGGCTTAATCTTTG 480
||||||||| |||||
Sbjct 15 ATGGCTTAACCTTTG 1
>seq16716
Length=1028
Score = 248 bits (274), Expect = 3e-63
Identities = 264/341 (77%), Gaps = 13/341 (4%)
Strand=Plus/Minus
Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 339 TTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCC 280
Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218
||||||||||| |||||||||| || || |||||||| ||||||||||||||||| |
Sbjct 279 GTTACCCGTTGCAACCATGGTAGTCCTAAATACTACCATCAAAAGTTGATAGGGCAGACA 220
Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACC 277
|||||| || | ||| ||| |||| |||| ||| || ||||||| || ||| |
Sbjct 219 TTTGAAAGATCTGTCGTCGGTACAAGACCATACGA-TCTGCAAGTTATCTAGAGTTCAAC 161
Query 278 AAGGA----GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGT 332
|| | || |||| || | | |||| |||||||| ||| | |||| ||
Sbjct 160 CAGTATACGACCAAAAAGGTCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCATTGGT 101
Query 333 CGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT- 389
| | |||| || |||||||||||||||||||||||||| | |||||| ||| | ||
Sbjct 100 CCGTGTTTATATTGCATGTATTAGCTCTAGAATTACCACAGATATCCAAGTA--ACTGTT 43
Query 390 -ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429
|| ||| || ||| ||||||||| ||||||||| || ||
Sbjct 42 AACGATCTAAGGAACCATAACTGATATAATGAGCCTTTTGC 2
>seq21503
Length=423117
Score = 118 bits (130), Expect = 3e-24
Identities = 89/105 (85%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139
||||| || | |||||||||||||| |||||||| | ||||||||||||||||||| ||
Sbjct 76084 AATTTACGGGGCTGCTGCCTTCCTTCGATGTGGTTGTCGTTTCTCAGGCTCCCTCTGCGA 76143
Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184
||||||||||| |||| |||||| ||||| ||| |||||| ||
Sbjct 76144 AATCGAACCCTGATTCTTCGTTACTCGTTGCAACCGTGGTAGTCC 76188
>seq18987
Length=114623
Score = 113 bits (124), Expect = 1e-22
Identities = 103/129 (80%), Gaps = 1/129 (1%)
Strand=Plus/Minus
Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197
|||||||||||||||||||| |||||| |||| |||||||||| || || ||| |||
Sbjct 95086 GGAATCGAACCCTAATTCCCTGTTACCTTTTGAAACCATGGTAGTCCTAAATACTATCAT 95027
Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCG 257
| ||| ||||| ||||||| ||||||| || | |||| ||| |||| | || ||| |||
Sbjct 95026 CAAAAATTGATGGGGCAGACATTTGAAAGATCTATCGTCGGTACAAGACGATACGA-TCG 94968
Query 258 TTAAGTTAT 266
|||||||
Sbjct 94967 GCAAGTTAT 94959
>seq792
Length=25733
Score = 96.9 bits (106), Expect = 1e-17
Identities = 119/161 (74%), Gaps = 14/161 (9%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403
|||||||||||||||||| | ||||| ||| |||| || ||||| || | |||
Sbjct 22453 GCATGTATTAGCTCTAGAGTGACCACTGTTTTCCAGGTC-TAAGGGACCGT------AAC 22401
Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463
|| || ||||||||| || || || ||||| | || | | ||||| ||| |
Sbjct 22400 GA------ATATAATGAGCCTTTTGCGGTATCACTTT-TAATTCGTGTATACATAGTTGT 22348
Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||| |||||||||| || || ||||||
Sbjct 22347 GCATGGCTTAATCTTTGTGACAAGCATACGAATATTGGCAG 22307
Score = 95.1 bits (104), Expect = 4e-17
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||||||| ||||| |||| ||||||| || | ||||||||||||||
Sbjct 22685 TATTTTTCGTCACTACCTCACCGTGCTGGGAGTGGGTAAGTTATGTGCCTGCTGCCTTCC 22626
Query 103 TTGGATGTGGTAGCCGTTTCTC 124
|| ||||| |||||||||||||
Sbjct 22625 TTAGATGTCGTAGCCGTTTCTC 22604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510036431616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |