Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15038 334 6e-87 seq9454 269 2e-67 seq17808 205 7e-48 >seq15038 Length=36294 Score = 334 bits (370), Expect = 6e-87 Identities = 1173/1808 (65%), Gaps = 55/1808 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| || ||||| || | ||| || || | ||| || || || || ||||| ||||| Sbjct 4451 ATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCGGT 4510 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | ||| || |||| |||| ||||| || || |||||||| ||||| | || || Sbjct 4511 TTTTAAGCCGGCTTTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGGTTC 4570 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || || || || || || || ||||| || || ||||| ||||||| Sbjct 4571 AGCTACGTGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCAT 4630 Query 65257 GTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 || ||| | ||| || |||| || ||||| || || || || | || | Sbjct 4631 GTTGATGGTT-GACTTCACCGAAATTTCCCAAACTGTTTTATATAATTCTTTTA--TGCT 4687 Query 65316 TT--GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGC-AATAATGCGATTACGCA 65372 || || || | || |||| || | ||| || ||| |||| |||| | | || || Sbjct 4688 TTCAGGTATGGCTTCGATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTT-CA 4746 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | || ||| | ||||| || | | || || || ||| ||| |||||| || Sbjct 4747 TGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGA 4806 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||| || |||||||| || || || ||||| || || || ||||| || | Sbjct 4807 TAAACTCACCAGACAGTACGCGTCGTGTGTAAATGTTTGAAGTATACGGCTCAAAAGACT 4866 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | |||| || |||||||| |||||||| || || ||||| ||||| |||| ||| || | Sbjct 4867 CGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACCAGCAAAGAAT 4926 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | |||| ||| | ||| ||||| || | || ||| ||||| | || Sbjct 4927 TGCGCACTCCACACCTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGACCAGTAG 4986 Query 65613 -CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 ||| |||| |||||||| | ||| ||| | || |||| | || ||| Sbjct 4987 GCGTTTT-ATCC------CACATATCATATTGAAGGATACCTTTACTAACTGGACTACCT 5039 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | | |||||| || | ||||| | || ||| || | || | || | Sbjct 5040 TCATATGTTTCGTACGGACCGTATAGTTTGGCCAATTCACAACTAGCTTCTAAGGCACCG 5099 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCAT---CGCTCTCGTA 65787 |||| || || || ||||| || ||| ||| ||||| ||| |||| ||||| Sbjct 5100 TAATATATTGTTTCAAAAATTTGTTTATTTAAG----CGTGCAGCATTTTCGCTTTCGTA 5155 Query 65788 CGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 || || ||| | | | | ||| || | ||||| || || | ||| || ||||| Sbjct 5156 GGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACG 5215 Query 65848 ATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCG 65907 |||||| ||||| || ||| | || || | |||||||||||||||||||| || Sbjct 5216 ATGACGAAAATTAGACTTTCTGGTTTCCGGCAATGGGTAGTAATTGATATCGATTATTTT 5275 Query 65908 ATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTT 65966 || | ||| | ||| | | | | | | | | | |||| |||||| | |||| Sbjct 5276 GTTGAGATTCCTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGA-AAATCATATTGTT 5334 Query 65967 TAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 || | | || || ||| ||| |||| ||||| || |||| Sbjct 5335 TA------TTTGTCGTTACGAACATATTCAAC---------GCAATTGATGCCAGATTGC 5379 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 | || ||||| || |||| | ||||| ||||| ||||| || || | |||||||| Sbjct 5380 AAACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACATAAGTTACTGCATT 5439 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGT 66146 ||| ||||| | ||||||||||||||| ||||| ||||| || || ||||| | ||||| Sbjct 5440 TTATAGTGCCAACATTCTGTTGATTACTTTTGCGGTTGCAAGCGTCTTTGTAAAGCATGT 5499 Query 66147 ACGGAGTGCCGGTCTCAACTTGGG-ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 | ||||| ||||| || ||||||| ||| || || ||| ||| | | || || || Sbjct 5500 AAGGAGTTCCGGTTTCTACTTGGGCACTGCAT-ATTGCGAACCATAAGTCACGAGCTTTT 5558 Query 66206 ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCA 66265 | || ||| | || | | |||||| | |||| | || || || Sbjct 5559 ATTGTTTTGTTCGCTTTGCCCTCGTCTTCGTATTTCACGTATAATCTATCAAATTTGTCT 5618 Query 66266 CCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCC 66325 || | | ||| ||| | || || || || |||||||| || ||||||| |||| Sbjct 5619 CCATAAATTTCACACAAGCCAGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCA 5678 Query 66326 TGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCT 66385 || || | ||| || |||||||||||||| || || || || | ||| ||||| Sbjct 5679 GCCTCAACTCTTTTCATGAACAGATCAGGTATCCACAGAGCATAAAATAAATCTCGTGCA 5738 Query 66386 CGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGC 66445 || | |||||| | || |||||| ||| | || || || || || || || ||| Sbjct 5739 CGATCCTCCTCTTTACCCGTATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGC 5798 Query 66446 CATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAG 66505 || || || | ||| || || || | ||| |||||| || |||||||||||||| || Sbjct 5799 CAAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAA 5858 Query 66506 CGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTG 66565 || || ||||||||||| | ||||||||| || || || |||| |||| | || | | Sbjct 5859 CGGGCAACATTGTTGAACAGACGCAACATAGGAACAAGACCGTCAGATACGTCACTATTA 5918 Query 66566 CCGTCGATG--GGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 | |||| | ||| ||| ||||| |||| ||| ||||| || ||||||| Sbjct 5919 C--AAGATGTCTTAGTCCCTTTTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGG 5976 Query 66624 CCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 ||| ||| || || |||||| | | | || | | | || || ||||||||||| Sbjct 5977 CCGACTTAGAAATTTTAGCACATTGGTCTACAGCCTTCATAATACCATCAATGGAGTCTT 6036 Query 66684 CCTTGATGGTCAGGAGGTAGCATGA--ACTA-AGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 || || || || | | |||| || || | || | || || || || || | Sbjct 6037 CCGGCATAGTTAGCAAGAAGCAGGACGACAATTGTGGACGTATG---GTAGCAGCACCAA 6093 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGA 66800 | | || || | ||| || ||||||||| |||||| ||| || || || || Sbjct 6094 ATAAAGTTGGGGAAGCATGAGTAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAG 6153 Query 66801 CAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGC 66859 | || ||||||| ||||| ||||| || | || ||| ||||| | | | ||| ||| Sbjct 6154 CCGCTTCAATGTCATCGCCGTGAATGCCAATAGCGACA-CGCATTAACATATGTTGTGGC 6212 Query 66860 CGTTCGAC 66867 || || || Sbjct 6213 CGCTCCAC 6220 >seq9454 Length=16677 Score = 269 bits (298), Expect = 2e-67 Identities = 383/536 (71%), Gaps = 2/536 (0%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||||||||| || || ||||| | || ||||| || | || ||||||||| | || | Sbjct 13005 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 13064 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 || | || ||| ||| |||| ||||| ||| |||||| ||||| || ||||| | Sbjct 13065 GGAATCGGTTAAGTGACGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGG 13124 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || ||||| || |||||||||||| ||||||| || | || ||||| ||| | Sbjct 13125 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 13184 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | || || ||||| || ||||| || || ||||||||||| ||||| || ||||| |||| Sbjct 13185 CTGAAGCTCGTTGCTTTTACGGTTTTCAAATTGCCATGGAAAATGTGCATTCGGAAATGT 13244 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 | ||| | || ||||| || || |||| ||| | ||||||||| | || |||| Sbjct 13245 ATAGTCTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATATCTCTTTAATG 13304 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 |||| ||||| || || ||| ||| ||| || || ||||| | ||||| | || Sbjct 13305 CCATTGAGACAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATGGAT-ATCA 13363 Query 61466 GTACA-ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 || |||||| ||||| || || | | || || || | ||||| ||| | || Sbjct 13364 TCGCATTCGGCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAGGTATTTTC 13423 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 || ||||| || || | || |||||| | |||||||||||| | ||||| ||| | Sbjct 13424 TTTAGTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTA 13483 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGT 61640 || ||| ||||| |||||||||| || || ||| |||| ||||| ||||| || Sbjct 13484 ACATTCTCTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTGCGGT 13539 >seq17808 Length=19168 Score = 205 bits (226), Expect = 7e-48 Identities = 371/540 (69%), Gaps = 2/540 (0%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| || || || ||||| || ||||| || |||| | | ||| ||||||||||| Sbjct 19057 GCAATTGAGGCCAGATTGCAAACTGCTATTTCATCAGCCGACGAATATTCGACAATTTCT 18998 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 || |||| ||||| || ||| ||||| | ||||||||||||||| |||||||| || Sbjct 18997 GTACACAAGTTACTACATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAA 18938 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG-ACTCAATGATGGCGTG 66186 ||||| ||||| | |||||| ||||| |||||||| ||||||| || || || ||| Sbjct 18937 GCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCGCTGCAT-ATTGCGAA 18879 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTA 66246 ||| | | || || | | || ||| |||| | | ||| || | | || Sbjct 18878 CCACAAGTCACGAGCTTGTATTGTTTTATTCGCTTTACCCTCGTCTTCATATTTTATATA 18819 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 | | || || || || | ||||| || | || || || || || ||||| Sbjct 18818 CAATTTATCAAATTTGTCTCCATAAACTTCTTCCAAGCCAGGGCATTTATGGGGGCACAT 18759 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 || ||||||| |||| ||||| | ||| |||| ||| |||||||| || || Sbjct 18758 TAGAGACCAATGCTCATCAGCCTCTACTCTTTTCATGAATAAATCTGGTATCCACAGTGC 18699 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 || || | ||| ||||| || | ||||| | || ||| || ||||| || || Sbjct 18698 ATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTAGAAA 18639 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 || || || || || ||||| ||||| | || || ||||| | ||| |||||| || Sbjct 18638 TTCGAAAATATCTGCGTGCCAAGGTTCTAAATATATAGCGAAAGCCCCCGGACGTTTCCC 18579 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||||||||||| || || || || ||||||||||| | ||||||||| || || || || Sbjct 18578 ACCACCTTGGTCTACATAACGGGCAACATTGTTGAAAAGACGCAACATAGGAACAAGTCC 18519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451367339440