Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1085 178 2e-42 seq124 116 6e-24 seq81 111 2e-22 seq706 100 4e-19 >seq1085 Length=1130 Score = 178 bits (196), Expect = 2e-42 Identities = 183/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 175 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 232 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 233 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 292 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 293 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 352 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||| |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 353 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 405 >seq124 Length=828964 Score = 116 bits (128), Expect = 6e-24 Identities = 171/230 (74%), Gaps = 13/230 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| || ||||||| | |||||||||| || | Sbjct 578126 GTACAAAGGGCAGGGACATAATCAAAGCGAGTTT-ATGACTCACACTTACTAGGAGTT-C 578183 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAA-AGA 117 | | | | | |||| || | | | ||||| | || || |||| |||| || Sbjct 578184 CAAGCTCATGTG-AACACTTTCCGTTCACAATCCCAAGCATGA--AAATGCTTCAGCAGT 578240 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||| ||||| ||| | | | ||| | ||| ||||| | || || |||||||| Sbjct 578241 TTACCCAGACCTCTCGCGCTACGAAATA--CCCGTC-AATACTTTCATTGCGGCGCGCGT 578297 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||| || |||||||||||||||||| | ||||||||| ||||| ||| Sbjct 578298 GCGGCCGAGGACATCTAAGGGCATCACATATCTGTTATTG-CTCAACCTT 578346 >seq81 Length=1488147 Score = 111 bits (122), Expect = 2e-22 Identities = 165/224 (74%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| || ||||| ||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 886059 GTACAGAGAGCAGGCACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 886116 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 | ||| | | || | || |||| | ||| | | ||||| ||||| | || Sbjct 886117 CAAGTTCATGTGAAA-AGTTTCAATTTACAATCTCAAGCACGAAAGCGTTTCAGCGGCTT 886175 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTG-TAGCGCGCGTGC 178 ||| |||||| |||| | || ||| || ||||| ||| | | ||| |||||||| Sbjct 886176 ACCTGGACCTCTCGGTCGAGAAAATACAC--GTTGA-TACTTTCGCAATAGGGCGCGTGC 886232 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||| ||||| |||||||||||||||||||||||| ||||| Sbjct 886233 AGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTG-CTCAA 886275 >seq706 Length=19342 Score = 100 bits (110), Expect = 4e-19 Identities = 167/229 (73%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| |||||| ||| |||| ||||| || |||| || | |||||| ||| || | Sbjct 3906 GTACAAAGAGCAGGGTGGTAATCAATGCGAG-TTAATGATTCACACTTACTGGGAGTT-C 3849 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| || || || || || | | ||||| | || || || | |||| | | Sbjct 3848 CAAGTTCAACTGCA-CAGTTTCAGTTCACCATCCCAAGCATGA--AAGTGGTTCAGCGGT 3792 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| || | || ||| ||| || | |||||||||||| Sbjct 3791 TTACCCGGACCTCTCGGTCTAGGAAATT--CGCGGTGA-TACTTCCATTGTAGCGCGCGT 3735 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || ||||| |||||||| ||||| || ||||||||| || ||||| || Sbjct 3734 GCCTCCCAGGACATCTAAAGGCATTACCGACCTGTTACTG-CTCAATCT 3687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751987426090