Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1085 250 4e-64 seq10 120 5e-25 seq706 105 1e-20 seq79 95.1 2e-17 seq361 93.3 7e-17 seq123 91.5 2e-16 seq217 84.2 3e-14 seq66 84.2 3e-14 seq597 82.4 1e-13 seq53 77.0 5e-12 seq124 75.2 2e-11 seq81 75.2 2e-11 seq100 73.4 6e-11 >seq1085 Length=1130 Score = 250 bits (276), Expect = 4e-64 Identities = 209/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 333 GTCAGTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 391 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 392 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 450 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 451 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 510 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 511 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 570 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 571 ATCAATCTGTC 581 >seq10 Length=2932983 Score = 120 bits (132), Expect = 5e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 ||||| |||||| || |||||||| ||||||||||||||||| | ||||||||||||| | Sbjct 2651932 GGTCTTGTTCGTCATGGGAATTAATCAGACAAATCACTCCACGAGCTAAGAACGGCCACG 2651873 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| || |||||||| ||| ||||| || Sbjct 2651872 CACCACCACCCGCAGACTCGAGAAAGAGTTATTAATCTCTC 2651832 >seq706 Length=19342 Score = 105 bits (116), Expect = 1e-20 Identities = 84/101 (83%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| || ||||||| ||||||||||||| ||||||||| ||||||||| ||||||| | Sbjct 3512 TCTCCTTGGTTATCGTAATTAACCAGACATATCACTCCATGAACTAAGAAGGGCCATGAA 3453 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCT 260 ||| ||||||| || |||||||||||| || |||||| Sbjct 3452 CCA----CCATAGATTCGCGAAAGAGCTATCTATATGTCCT 3416 >seq79 Length=1190898 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA-CCAACTAAGAACGGCCAT 216 ||||||||||||||||| |||||| ||||||||| |||||| | || |||||| | | | Sbjct 917304 GGTCTCGTTCGTTATCGAAATTAATCAGACAAATGACTCCAGCGAATTAAGAAGCGTCGT 917363 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||| ||||||| ||||| |||| || |||||| || Sbjct 917364 GCAGTACCATCCATAGATTCAAGTAAGAATTACCAATCTCTC 917405 >seq361 Length=225582 Score = 93.3 bits (102), Expect = 7e-17 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||| |||| |||||| || ||||| | | ||||| ||| || ||| | Sbjct 72263 GTCTCGTTCGTTATCAGAATCGACCAGATAAGTCACTTCGCGAACTATGAATGGTCATCC 72204 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||| |||| |||||||||| ||||| Sbjct 72203 ACCACCACCCGTAGATTCAAGAAAGAATCATCAA 72170 >seq123 Length=883546 Score = 91.5 bits (100), Expect = 2e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||| || |||||| ||||||||| |||||||||||||| | | Sbjct 582270 GTCTCGTTCGTTATCGGAATCAATCAGACAGATCACTCCAAGAACTAAGAACGGCCCTTC 582211 Query 219 ACCACCACCC 228 |||||| ||| Sbjct 582210 ACCACCGCCC 582201 >seq217 Length=460023 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||| |||||| ||||||||||| || || || |||||| ||||||| Sbjct 13185 GTCTCGTTCGTTATCGAAATTAATCAGACAAATCATTCTACGAATGAAGAACTGCCATGC 13126 Query 219 ACCACCACCCATAG 232 |||| || ||| || Sbjct 13125 ACCATCATCCACAG 13112 >seq66 Length=1297373 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||| |||||| ||||||||||| || || || |||||| ||||||| Sbjct 1878 GTCTCGTTCGTTATCGAAATTAATCAGACAAATCATTCTACGAATGAAGAACTGCCATGC 1937 Query 219 ACCACCACCCATAG 232 |||| || ||| || Sbjct 1938 ACCATCATCCACAG 1951 >seq597 Length=56106 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||||||||||||||||||| || |||||| |||||| || |||||| |||||| | || Sbjct 20445 TCTCGTTCGTTATCGGAATCAATCAGACAGATCACTTCAAGAACTAAAAACGGCGTTTCA 20504 Query 220 CCACCACCCA 229 |||||||||| Sbjct 20505 CCACCACCCA 20514 >seq53 Length=1517835 Score = 77.0 bits (84), Expect = 5e-12 Identities = 69/87 (79%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 || ||| ||||||||||||| ||||||| |||| |||||| ||||||||||| ||| Sbjct 855644 TCAGAAATAACCAGACAAATTACTCCACGAACTCAGAACGACCATGCACCACTGCCC--- 855588 Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258 | | || |||||||||| |||| || Sbjct 855587 --ACCGAGGAAGAGCTATCGATCTATC 855563 >seq124 Length=828964 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| || |||||||||||||| || |||||||||||||||||| | ||||||||| ||| Sbjct 578282 TCATTGCGGCGCGCGTGCGGCCGAGGACATCTAAGGGCATCACATATCTGTTATTG-CTC 578340 Query 76 AAACTT 81 || ||| Sbjct 578341 AACCTT 578346 >seq81 Length=1488147 Score = 75.2 bits (82), Expect = 2e-11 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||| |||||||| |||||| ||||| |||||||||||||||||||||||| ||||| Sbjct 886221 TAGGGCGCGTGCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTG-CTCAA 886275 >seq100 Length=999492 Score = 73.4 bits (80), Expect = 6e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACG 211 |||||| |||||||| |||||||||| ||||||||||||| ||||||| |||| Sbjct 427019 GTCTCGCTCGTTATCAGAATTAACCAAACAAATCACTCCAACAACTAACAACG 426967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786677006