Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq67 226 5e-57 seq791 219 7e-55 seq372 219 7e-55 seq117 197 2e-48 seq315 192 1e-46 seq246 179 6e-43 seq559 145 1e-32 seq584 141 2e-31 seq747 132 8e-29 seq11 89.7 9e-16 seq152 73.4 7e-11 seq121 73.4 7e-11 >seq67 Length=1297030 Score = 226 bits (250), Expect = 5e-57 Identities = 200/249 (80%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1072921 GTCATTAGTAGG------CTAACCTGTCTCACAACGGTCTAAACCCAGCTCACGTTCCCT 1072868 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| ||||||||| |||||| Sbjct 1072867 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGACGAGCCG 1072809 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA------ 203 ||||| ||| |||||||||||||||||||||||||||| ||| || ||||||| Sbjct 1072808 ACATCAAAGAATCAAAAAGCAACGTCGCTATGAACGCTAGGCCGCGGCAAGCCATTCCCT 1072749 Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 ||||||||||||| |||||||||| ||||||| | ||| | | | ||||||| Sbjct 1072748 GTTATCCCTGTGGCAACTTTTCTGACACCTCTTGTTAAAAACTCCTTAAACCAAAAGGAT 1072689 Query 264 CGATAGGCC 272 ||||||||| Sbjct 1072688 CGATAGGCC 1072680 >seq791 Length=4973 Score = 219 bits (242), Expect = 7e-55 Identities = 194/243 (80%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 || || ||||| |||||||||| || ||||| ||| ||| |||||||||| Sbjct 902 GTAATTAGTAGTGTAAAACTAATCTCTCTCACGAC-----------AGCCCACGTTCCCT 950 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| || ||| |||||||||||| ||| Sbjct 951 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTATGGTTCACAATGATAGGAAGACCCG 1009 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1010 ACATCAAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 1069 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| | ||| | | | ||||||||||||| Sbjct 1070 CCTGTGGTAACTTTTCTGACACCTCTTGTTAAAAACTCCTTAAACCAAAAGGATCGATAG 1129 Query 270 GCC 272 ||| Sbjct 1130 GCC 1132 >seq372 Length=213394 Score = 219 bits (242), Expect = 7e-55 Identities = 155/176 (88%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 || || ||| |||||||||||||||||||| | ||||||||||||||||||||| | Sbjct 137751 ATAACCGTCCAAACCCAGCTCACGTTCCCTTGCA-TGGGTGAACAATCCAACGCTTGGTG 137693 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||| || || ||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 137692 AATTTTGGTTTACAATGATAGGAAGAGCCGACATCAAAGGATCAAAAGGCGACGTCGCTA 137633 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 137632 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT 137577 >seq117 Length=880313 Score = 197 bits (218), Expect = 2e-48 Identities = 167/204 (82%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| | |||||||||||||| |||| || ||||| ||||||||||||||||||| || Sbjct 432231 GTCATTAATAGGGTAAAACTAATCTGTTTCGGGACGGACTAAACCCAGCTCACGTTCACT 432172 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || |||||||| |||||||||||| | ||| |||||| ||||||| |||| | Sbjct 432171 TGTA-TGGGTGAATAATCCAACGCTTGGTGTATTTTGCTTCACAATGATAGCAAGAAAAG 432113 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 | ||| ||||| |||||||| | | ||||||||||||||||| |||||||||| ||||| Sbjct 432112 ATATCAAAGGAGCAAAAAGCTATGCCGCTATGAACGCTTGGCCCCCACAAGCCAATTATC 432053 Query 210 CCTGTGGTAACTTTTCTGGCACCT 233 || |||||||||| ||| ||| || Sbjct 432052 CCAGTGGTAACTTCTCTAGCATCT 432029 >seq315 Length=289060 Score = 192 bits (212), Expect = 1e-46 Identities = 167/206 (81%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||| || ||||||| |||||||||||||||||||||||||||||| || || Sbjct 82323 GTCATTAGTAGAGTGAAACTAATCTGTCTCATGACGGTCTAAACCCAGCTCACATTTACT 82382 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||||| |||| ||||||| | ||| ||||| || |||| |||| || Sbjct 82383 TGCA-TGGGTGAATAATCTAACGCTTGGTGTATTTGGCTTCACAATAATAGCAAGAACCC 82441 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 | ||| | |||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| Sbjct 82442 ATATCAAGGGATCAAAAAGCTACGCCGCTATGAACGCTTGGCCGCCACAAGCCAATTATC 82501 Query 210 CCTGTGGTAACTTTTCTGGCACCTCT 235 || ||| |||||| ||| || |||| Sbjct 82502 CCAGTGATAACTTCTCTAACATCTCT 82527 >seq246 Length=385303 Score = 179 bits (198), Expect = 6e-43 Identities = 146/176 (83%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 ||||||||||||||||||| || |||||||||||| ||||||||||||||| | | Sbjct 378147 TAGGGTAAAACTAACCTGTTCCACGACGGTCTAAACACAGCTCACGTTCCCTTGCA-TCT 378089 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 ||||| |||||||||||| |||| |||||| |||||||||| ||||||||| || Sbjct 378088 GTGAAAAATCCAACGCTTGGGAAATTTTGCTTCACAATGATAGGAAAAGCCGACATGAAA 378029 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 ||||| ||||| | ||||||||||| ||||||| | |||||| |||||||||||| Sbjct 378028 GGATCGCAAAGCGATGTCGCTATGAATGCTTGGCCGTCACAAGTCAGTTATCCCTG 377973 >seq559 Length=72016 Score = 145 bits (160), Expect = 1e-32 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 ||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 441 CGGAATACTAGGAAGAGCCGACATCAAAGGATCAAAAAGCGACGTCGCTATGAACGCTTG 382 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 || |||||||| || ||||| | |||||||||||||||||||||| ||| | | Sbjct 381 GCCGCCACAAGGCAAGTATCCTTATGGTAACTTTTCTGGCACCTCTTATTAAAAACTCCT 322 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTT 279 | |||||||||||||||| | |||| Sbjct 321 TAAACCAAAAGGATCGATAGGCCGCGCTTT 292 >seq584 Length=61430 Score = 141 bits (156), Expect = 2e-31 Identities = 122/150 (81%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 |||||||||| ||| || ||| |||||||||||| |||| | | || |||| || Sbjct 11765 AGCTCACGTTTCCTTGTA-TGGATGAACAATCCAATGCTTGGTGGGCTTTGTTTCGAAAT 11707 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 ||||||||||||||||||| |||||||||||||| ||||| ||||||||| | ||| | | Sbjct 11706 GATAGGAAGAGCCGACATCAAAGGATCAAAAAGCGACGTCACTATGAACGTTCGGCCGTC 11647 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||||| ||||||| || || ||||||||| Sbjct 11646 ACAAGGCAGTTATAACTATGCTAACTTTTC 11617 >seq747 Length=11701 Score = 132 bits (146), Expect = 8e-29 Identities = 87/96 (91%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 ||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||| Sbjct 218 GGAAGAGCCGACATCAAAGGATCAAAAAGCGACGACGCTATGAACGCTTGGCCGCCACAA 277 Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 ||| | |||||| |||||||||||||| ||||||| Sbjct 278 GCCGGGCATCCCTATGGTAACTTTTCTGACACCTCT 313 >seq11 Length=2944492 Score = 89.7 bits (98), Expect = 9e-16 Identities = 128/184 (70%), Gaps = 15/184 (8%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||| |||||||||||||| |||| |||| ||||||| |||| Sbjct 232171 TCATTAGTGGGGTAAAACTAACCCGTCTTTGGACGTTCTAAACACAGCA----------- 232123 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||||||||||| || |||| | |||| |||||| || |||||| Sbjct 232122 ----TGGATGAACAATCCAACACTCGATAAATTTTCCTTCACAATGATAAAAAAAGCCGA 232067 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || | || |||||| ||| | | |||| |||||||| || || |||| | ||||||| Sbjct 232066 CACCAAACGATCAACAAGTGATATTGCTACGAACGCTTCGCAGCGACAATTCGGTTATCC 232007 Query 211 CTGT 214 | || Sbjct 232006 CGGT 232003 >seq152 Length=810649 Score = 73.4 bits (80), Expect = 7e-11 Identities = 70/87 (80%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCT-CACGTTCCC 88 || |||| || ||||||||||||| ||| | |||| |||||||| |||| ||||| || Sbjct 101073 GTTATCAAGAGCGTAAAACTAACCTCTCTTACGACGATCTAAACCTAGCTAAACGTTGCC 101132 Query 89 TATTAGTGGGTGAACAATCCAACGCTT 115 | | ||||||||||||||||| ||| Sbjct 101133 T-TGCATGGGTGAACAATCCAACACTT 101158 >seq121 Length=844352 Score = 73.4 bits (80), Expect = 7e-11 Identities = 90/118 (76%), Gaps = 5/118 (4%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTG-TCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 ||||| |||| | ||||||||| || || || |||| |||| ||||||||| | |||| Sbjct 506395 GTCATTAGTATGATAAAACTAATCTAATCCCACGACGATCTAT-CCCAGCTCATGCTCCC 506337 Query 89 T-ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 | ||| || | | ||||||||||||| |||| |||||| |||||||||||| Sbjct 506336 TTATT--TGAATAACCAATCCAACGCTTGGTTAATTTTGCTTCACAATGATAGGAAGA 506281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854385253056