Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1085 203 6e-50 seq81 122 2e-25 seq124 120 6e-25 seq706 104 4e-20 >seq1085 Length=1130 Score = 203 bits (224), Expect = 6e-50 Identities = 202/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 431 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 374 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||||| ||||||||||||||||||| | || || || | | Sbjct 373 ATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 314 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 313 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 254 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 253 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 194 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 193 AAGTCCCTGCCCTTTGTA 176 >seq81 Length=1488147 Score = 122 bits (134), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||| ||||| |||||| |||||||| ||| Sbjct 886275 TTGAG-CAATAACAGGTCTGTGATGCCCTTTGATGTCCTGGGCTGCACGCGCCCTATTGC 886217 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 || || ||||| || || || | ||| ||||| ||||| | | |||| || Sbjct 886216 GAAAGTATCAACGTGT--ATTTTCTCGACCGAGAGGTCCAGGTAAGCCGCTGAAACGCTT 886159 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||||| | ||| | |||| || | || | | | ||| ||||| || |||||| | Sbjct 886158 TCGTGCTTGAGATTGTAAATTGAAACT-TTTCACATGAACTTGGAATTCCCAGTAAGTGT 886100 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| | | ||| |||||||||| ||||| || |||| Sbjct 886099 GAGTCATTAACTCGCATTGATTACGTGCCTGCTCTCTGTA 886060 >seq124 Length=828964 Score = 120 bits (132), Expect = 6e-25 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| ||||||||| | |||||||||||||||||| || |||||||||||||| Sbjct 578346 AAGGTTGAG-CAATAACAGATATGTGATGCCCTTAGATGTCCTCGGCCGCACGCGCGCCG 578288 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 || ||| || ||| || || | | | || |||||||||||| || | || | Sbjct 578287 CAATGAAAGTATTGACGGGT--ATTTCGTAGCGCGAGAGGTCTGGGTAAACTGCTGAAGC 578230 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | || |||| ||||| | | | | || | || | | | | | |||| |||||||| Sbjct 578229 ATTTTCATGCTTGGGATTGTGAACGGAAAGTGTT-CACATGAGCTTGGAACTCCTAGTAA 578171 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | ||||| | | ||| ||||||| |||||||||||||||| Sbjct 578170 GTGTGAGTCATAAACTCGCTTTGATTATGTCCCTGCCCTTTGTA 578127 >seq706 Length=19342 Score = 104 bits (114), Expect = 4e-20 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| || ||||||||| || ||||| |||||||| ||||| ||||||||||||| Sbjct 3687 AGATTGAG-CAGTAACAGGTCGGTAATGCCTTTAGATGTCCTGGGAGGCACGCGCGCTAC 3745 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || || || || | || ||| | ||| ||||| |||||| | | || | Sbjct 3746 AATGGAAGTATCACCGCG--AATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 3803 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | ||| || ||| |||| || |||||| Sbjct 3804 CTTTCATGCTTGGGATGGTGAACTGAAACT-GTGCAGTTGAACTTGGAACTCCCAGTAAG 3862 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | |||| | | ||| |||||||| |||||| ||||||| Sbjct 3863 TGTGAATCATTAACTCGCATTGATTACCACCCTGCTCTTTGTA 3905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947183651328