Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq67 224 3e-56 seq747 223 1e-55 seq706 140 1e-30 seq516 134 5e-29 seq142 134 5e-29 seq83 122 3e-25 seq1218 118 3e-24 seq246 109 2e-21 seq2 102 3e-19 seq712 98.7 3e-18 seq791 86.0 2e-14 seq372 77.0 1e-11 seq409 75.2 4e-11 seq6 75.2 4e-11 >seq67 Length=1297030 Score = 224 bits (248), Expect = 3e-56 Identities = 215/276 (78%), Gaps = 21/276 (8%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||||||| || |||||| |||| |||| ||||||||||||| | ||| Sbjct 1072489 GTTCCGCTTAATC----AAGTAAGGAAACAATAACAGTAGTGGTATTTCCTTGGCGATAA 1072434 Query 228 -----CCGAAACGGC------TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 |||||| | ||||||||||||||||||||| | ||| | | ||| | Sbjct 1072433 TGAACCCGAAAGAACAATATCTCCCACTTATTCTACACCTCTTATGTCTTCTTACACTGC 1072374 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | || |||||| ||||||||||| || |||||||||||| ||| | ||| ||||||| Sbjct 1072373 CAGATTAGAGTTAAGCTCAACAG--TCATCTTTCCCCGCTAATTTTTCTAAGTCCGTTCC 1072316 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1072315 CTTGGCTGTGGTTTCGTTAGATGGTAGATAGGGACAGAAAGAATCTCGTTAATCCATTCA 1072256 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||| |||||||||||||||||| |||| |||| || Sbjct 1072255 TGCGTGTCACTAATTAGATGACGGGGCACTTGGGTA 1072220 >seq747 Length=11701 Score = 223 bits (246), Expect = 1e-55 Identities = 167/196 (85%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||| | ||| | ||| | | || ||||||||| ||||| Sbjct 729 CTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCAGATTAGAGTCAAACTCAA 788 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| ||| ||| ||| ||||||||||||| |||||||| ||||| Sbjct 789 CAGGGTCTTCTTTCCGTGCTAATTTTCTCAAACCCGTTCCCTTGGGTGTGGTTTTGCTAG 848 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||||||||| |||||||||||||||||||| || ||||||||||||||| Sbjct 849 ATAGTAAATAGGGACAGAAAGAATCTCGTTAATCCATTCACGCAAGTCACTAATTAGATG 908 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 909 ACGAGGCATTTGGCTA 924 >seq706 Length=19342 Score = 140 bits (154), Expect = 1e-30 Identities = 85/90 (94%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 6135 TTAAGAGAGCCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTG 6076 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATT 524 ||||||||| ||||||||| |||||||||| Sbjct 6075 ACATTCAGAACACTGGGCAAAAATCACATT 6046 >seq516 Length=115990 Score = 134 bits (148), Expect = 5e-29 Identities = 88/97 (91%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||| | |||||| |||| |||||||||| |||||||| || |||||||||||||||||| Sbjct 83301 AGATACTCATAGGTACTTCCGCCGTTTATCCGCGCTTACTTAAATTTCTTCACTTTGACA 83242 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||||||||||||||||||||||||||| |||||||| Sbjct 83241 TTCAGAGCACTGGGCAGAAATCACATTGTGTCAACAT 83205 Score = 86.0 bits (94), Expect = 2e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 3147 TACCCGCACTTACTTGAATTTCTGCACTTTGACATTCAAAGCACTGGGCAGAAATCCCAC 3088 Query 524 TGCGTCAACA 533 || ||| ||| Sbjct 3087 TGTGTCGACA 3078 >seq142 Length=698790 Score = 134 bits (148), Expect = 5e-29 Identities = 89/99 (90%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||||| |||||||||||||| ||||| |||||| | || Sbjct 154327 TTAAGAGAGTCATAGTTACTCCCGCGGTTTACCCGCGCTTACATGAATATCTTCATTGTG 154386 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| ||||||||||||||||||||||| || |||| Sbjct 154387 ACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAACA 154425 >seq83 Length=1120634 Score = 122 bits (134), Expect = 3e-25 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||| |||||| || ||| ||||| || | || | | | |||| |||||||||| Sbjct 714813 CTTCCACCTATTCTTCATTTCTTAAGTCTCTTTATAATGCCAGTTTAGAATCAAGCTCAA 714754 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| | ||| |||||||| |||||||||||||||||| |||| Sbjct 714753 CAGGGTCTTCTTTCCCTAATAATTTTTCCAAGCCCCTTCCCTTGGCTGTGGTTTTTCTAG 714694 Query 357 ATAGTAGATAGGGACAG 373 |||| ||||||||||| Sbjct 714693 TTAGTTGATAGGGACAG 714677 Score = 75.2 bits (82), Expect = 4e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 923659 AATCCATTCATGCGCGTCACCAATTAGATGACGAAGCATTTGGCTA 923704 >seq1218 Length=13536 Score = 118 bits (130), Expect = 3e-24 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 8508 TAGATAGGGACAGAAAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 8449 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 |||||||||||| |||| | ||||| ||| || Sbjct 8448 GGCATTTGGCTA--TTAA---AATCATATTTATTC 8419 Score = 89.7 bits (98), Expect = 2e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| | Sbjct 12336 TTAAGAAAGTCATAGTTACTCCCGCAATTTACACGCGCTTACTTGAATTTCTTCACTTCG 12395 Query 495 ACATTCA 501 ||||||| Sbjct 12396 ACATTCA 12402 >seq246 Length=385303 Score = 109 bits (120), Expect = 2e-21 Identities = 66/70 (94%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376922 AGATAGGGGCAGAAAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 376863 Query 422 GCATTTGGCT 431 |||||||||| Sbjct 376862 GCATTTGGCT 376853 >seq2 Length=5618958 Score = 102 bits (112), Expect = 3e-19 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||| |||| ||| |||||||||| ||| | || |||| ||| |||||||||||||||| Sbjct 1451915 AGATAGTCGTAGCTACTCCCGCCATTTGCTCGTGCTTACTTGGATTTCTTCACTTTGACG 1451856 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | | ||||||||||| ||||||||||| ||||||| Sbjct 1451855 TCCGAAGCACTGGGCAAAAATCACATTGTGTCAACA 1451820 >seq712 Length=13768 Score = 98.7 bits (108), Expect = 3e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||| Sbjct 2665 ATAGGGACAGAAAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTATAGGACCAGGC 2606 Query 424 ATTTGGCTA 432 ||||||||| Sbjct 2605 ATTTGGCTA 2597 >seq791 Length=4973 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 1187 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 1246 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| || |||||| ||||||||| ||||| ||||||| Sbjct 1247 ATTTGAGAGATGTACCTCCCCAGTCAAACTCCCTACCTGGCAATGTC 1293 >seq372 Length=213394 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGAC-ACCTGCGTTAT 65 ||||||||||| | | ||||||| | | |||| |||| |||| |||| |||||| Sbjct 137485 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACAACCTCCGTTAT 137426 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||| | |||||| ||||||||| ||||||||| ||||| ||| || Sbjct 137425 TATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAACGT 137379 >seq409 Length=184545 Score = 75.2 bits (82), Expect = 4e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||||||| ||||| | |||||||| | |||| |||||||||||| ||||| |||| Sbjct 73620 AGTCATAATTACTTCTTCCGTTTACT-GAGCTTACTTGAATTTCTTCGTCTTGACGTTCA 73562 Query 502 GAGCACTGGGCAGAAATCACA 522 |||||||| ||||||||||| Sbjct 73561 AAGCACTGGACAGAAATCACA 73541 >seq6 Length=3440554 Score = 75.2 bits (82), Expect = 4e-11 Identities = 98/136 (72%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||| ||| ||| | || | | ||| ||| || | ||||||| | | | Sbjct 2291130 CTCCCACTTATTCCACAAATCTGATATCTTCTTACACCGTCTGATTGGAGTCAATCCCTA 2291071 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| || |||||| |||| | ||| ||||||||||| ||||||||||| || Sbjct 2291070 CAGCGTTTTCTTTGCCCGGTAATTTTCTCAAGCCCGTTCTAAAAGCTGTGGTTTCTTTAC 2291011 Query 357 ATAGTAGATAGGGACA 372 | | ||||| ||||| Sbjct 2291010 ACACTAGATGTGGACA 2290995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635171776448