Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq167 116 1e-23 seq410 104 7e-20 seq44 86.0 2e-14 seq63 78.8 3e-12 seq161 75.2 3e-11 >seq167 Length=598916 Score = 116 bits (128), Expect = 1e-23 Identities = 336/516 (65%), Gaps = 51/516 (10%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTAC 58 || ||||| ||| |||| | || | | ||| | || || ||||| | |||||||| Sbjct 245567 TATTCATTGCAAGTACAGGGCCTCGTATATGAGTCGTGCATTGTTATTTTTCGTCACTAC 245626 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||| ||||| |||| ||||||| || | | || ||||| ||||| ||||| ||||||| Sbjct 245627 CTCACCGTGCTGGGAGTGGGTAAGTTATGTGTCTACTGCCATCCTTAGATGTCGTAGCCG 245686 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||||| | ||||||| |||| |||| Sbjct 245687 TTTCTCTG----------CGGAATCTAACC--------------------------ATGG 245710 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||| || || |||| || |||| || ||||| ||| || |||| || | ||| ||| Sbjct 245711 TAGCCCCAAATACTACTTTCAAAAGGTGGTAGGGTAGACATATGAAAGACCTGTCGTCGG 245770 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT-CACCAAGGAGCCCCGAA---GGGC 294 | |||| || | |||| | ||| || || | || | | | || || | Sbjct 245771 CACAAGACCGTACGATCTGG-AAGCGATCCAGAGTTCAATCGGTATACGACAAAATGGTC 245829 Query 295 GTTGGTT--TTTTATC-TAATAAATACACCCCTTCCGA-AGTCGGGGTTTTTA--GCATG 348 || | || ||||| | ||| | | ||| | ||| ||| | ||| || ||||| Sbjct 245830 GTCGCTTGGTTTTAGCCTAAGAGAAGCACACGTTCAATTAGTTCGTATTTATATTGCATG 245889 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 ||||||||||||| ||||||| ||| |||| | | | ||| | || ||| Sbjct 245890 TATTAGCTCTAGAGTTACCACTGTTGTCCAACCACCTATTACCGATCTACGGGACCGTAA 245949 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 | || ||||||||| || || || ||||| | || | | ||||| ||| |||||||| Sbjct 245950 CGAATATAATGAGCCTTTTGCGGTGTCACTTT-TAATTCGTGTATACATAGTCATGCATG 246008 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| | ||| |||||| Sbjct 246009 GCTTAATCTTTGAGACAAGCATACGGCTATTGGCAG 246044 >seq410 Length=182850 Score = 104 bits (114), Expect = 7e-20 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 ||||||||||| |||||||||||| ||||| |||||||||| || || |||||||| Sbjct 34326 AATCGAACCCTCATTCCCCGTTACTCGTTGCAACCATGGTAGTCCTAAATACTACCATCA 34385 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT 259 ||||||||| ||| || | ||||| || | ||| ||| |||| |||| ||| ||| Sbjct 34386 AAAGTTGATGGGGTAGTCAATTGAAAGATCTGTCGTCGGTACAAGACCATACGA-TCGGC 34444 Query 260 AAGTTAT 266 ||||||| Sbjct 34445 AAGTTAT 34451 >seq44 Length=1656860 Score = 86.0 bits (94), Expect = 2e-14 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| |||||| || ||| | || || || |||||| | | || | | |||||||||| Sbjct 1321889 AACCATAACTTATATAACAATCCGTTTGCGGTTTCAGTTT-TAATTCGTGTATACTTAGA 1321947 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||| |||||||| ||||||||||| Sbjct 1321948 CATGCATAGCTTAATCTTTGAAGCAAGCATACAACTACTGGCAG 1321991 >seq63 Length=1439020 Score = 78.8 bits (86), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 7/115 (6%) Strand=Plus/Minus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 |||| ||| |||||| |||||||||||| |||||| ||| || ||||||| |||| Sbjct 1234287 GGGAGTGGATAATTTACGCGCCTGCTGCTTTCCTTAGAT-TG------GTTTCTCGGGCT 1234235 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 || | | |||||||||| ||||| |||||||||| |||||| ||| || Sbjct 1234234 CCATTTGCGGAATCGAATTGCAATTCTTGCTTACCCGTTGCAACCATGATAGTCC 1234180 >seq161 Length=659757 Score = 75.2 bits (82), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 10/124 (8%) Strand=Plus/Minus Query 109 GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168 |||| |||||||||||||||| | ||||| ||||||| ||| ||||||||| ||| Sbjct 324687 GTGGAAGCCGTTTCTCAGGCTTTCGCTCCGAAATCGAA-CCTTGGCACCCGTTACCAGTT 324629 Query 169 GATACCATGGTAGGCCACT----ATCCTACCATCGAAA-GTTGATAGGGCAGAAATTTGA 223 | | || | || ||| || ||||| || ||| |||||||| |||||||||||| Sbjct 324628 GCAATCACGATA----ACTTTACATACTACCGTCAAAAGGTTGATAGAGCAGAAATTTGA 324573 Query 224 ATGA 227 | || Sbjct 324572 AAGA 324569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510373930496