Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq1190 156 1e-33 seq362 154 5e-33 seq170 150 6e-32 seq1308 145 3e-30 seq1391 95.1 4e-15 seq429 91.5 5e-14 >seq1190 Length=30524 Score = 156 bits (172), Expect = 1e-33 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 32668 AACCAGCGAAGCCGCTCAAAATTGGCATTGCGGCGGATATCTATCAGGATATCAAGGGGC 32727 ||| | |||| ||||||||||||||||||||||| || || ||| |||| ||||||| | Sbjct 18210 AACAACCGAATCCGCTCAAAATTGGCATTGCGGCAGACATTTATAAGGACATCAAGGCAC 18151 Query 32728 GTGAACTGGGTTTAACTCGAGCTAAGGCTAGCGCGGCGCTGATGTTCTATACACAAACGC 32787 || |||| | ||||| || || ||||| | || ||||||||||||| || ||||||| Sbjct 18150 GTAAACTCGAATTAACCCGCGCCAAGGCCGGGGCTTCGCTGATGTTCTACACTCAAACGC 18091 Query 32788 GGGCCTATCAGGAGGCAGTTCAGGTTGGCGATTCGCGATTCGACATCAACGGTCAGCCAT 32847 || |||| ||| | || || |||| || || ||| ||| ||| ||||| | Sbjct 18090 CGGTTTATCTGGAAACCGTGTGTGTCGGCGGCAGCCGTTTTGACCTCAGCGGACAGCCCT 18031 Query 32848 GTGGCGAGATTACAGAAGAACAGAAAGCCCATGCAGCCA--AGCAACTCGAAAA 32899 |||||| |||||| ||| |||| |||||| |||| ||| |||| || ||||| Sbjct 18030 GTGGCGCGATTACTGAAAAACAAAAAGCCTATGC--CCAGGAGCAGCTTGAAAA 17979 Score = 93.3 bits (102), Expect = 1e-14 Identities = 234/348 (67%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 23593 CATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGT 23652 |||||| ||| |||||| ||||| || | || || |||||||||| || || || Sbjct 17364 CATATCCCGGCGACGAATATGCTTTTGAATCAACTCTAGCAGCGCCATGCGCCGGTGCTG 17423 Query 23653 CAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAG-CGGAAATGCCTGATGATAAA 23711 || ||| | ||||| | | || | ||| | | ||||| || | || |||| Sbjct 17424 CATGATGGCATCATCATCGAGCGTGGTCACATCAGCTAATCGGAACGGCTGGCTG-TAAA 17482 Query 23712 CCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATACG 23771 | | ||||| | || ||| |||| || ||||| ||| ||||||||||| | || Sbjct 17483 TCTTTGCCGCGATATCGGGCCGCTCAAAGCAATCCAGCCAGTTGGTGCTGTACGGGTGCG 17542 Query 23772 GCGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCT 23831 | | | |||| ||| ||||||| |||| |||| || || | ||| ||||| Sbjct 17543 GACTCTTTTCGCCGCAGTAGAACAGCACAGGAAAAACCAAAGGCAGTTTATC-ATGCCCG 17601 Query 23832 G-TTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGC 23890 | ||| ||||||||||||||||| || | || || | |||||| | |||||||| Sbjct 17602 GCTTCCAGATGCCGCTGCATCGCCGCCATGCTGTAGCGCATCAATCGCCAGGCCATCAG- 17660 Query 23891 TTTTCCGGGCGGC-TCTGGTGCTCTATCAGACAGTAGACGTAACCATC 23937 ||| |||| | | ||||| |||| || ||| || | || ||||| Sbjct 17661 TTTGTCGGGTGACGATTGGTGTTCTAGCACACAATATATATAGCCATC 17708 Score = 80.6 bits (88), Expect = 9e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 32571 ATGACCGAACAAAAACGACCGCTGCTGAGCATCAAGCGCAAGCCCAAAATATTTGTGAAC 32630 ||||||||||||||||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 18490 ATGACCGAACAAAAACGCCCTACGCTGACTATCAAGCGAAAACCGAAAATCTTTGTGAAC 18431 Query 32631 CCTAAACATTCCTCGAAACCTGCGCCGTCTCCCACAAAACCAGCGAAGC 32679 || || || | || || ||||| | || ||||||| ||||||| Sbjct 18430 CCGAAGCACGCAAACAACCCCGCGCCTCCACCGCCAAAACCGGCGAAGC 18382 >seq362 Length=5845 Score = 154 bits (170), Expect = 5e-33 Identities = 111/128 (87%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 2510 ATGGGCCAAGTCGCATTTGATACGCAAGAGTTCGTCGAGACGCTGGAGAACGCCGGTTTA 2569 ||||||||||| ||||||||||| ||||| |||||||| || || || ||||| || || Sbjct 2376 ATGGGCCAAGTTGCATTTGATACTCAAGAATTCGTCGAAACACTAGAAAACGCTGGGTTG 2435 Query 2570 CCGAAAGACCAGGCGCGGGCGATTTCTATCGCTGTTCGCAAGTCTCACGAGGTGGCGGAT 2629 |||||||| ||||| | |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 2436 CCGAAAGATCAGGCAAGAGCGATTTCTATCGCTGTTCGCAAGTCACACGAAGTGGCGGAT 2495 Query 2630 GTGGCGAC 2637 || ||||| Sbjct 2496 GTAGCGAC 2503 Score = 134 bits (148), Expect = 5e-27 Identities = 126/159 (79%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 31590 TTATACTGAACTAAAACCAGAGGGTTCCAC-ATGGGCCAAGTCGCATTTGATACGCAAGA 31648 ||| ||| || |||| ||| |||| | | ||||||||||| ||||||||||| ||||| Sbjct 2345 TTAAACTAAAGAAAAAACAGGAGGTTTCGCTATGGGCCAAGTTGCATTTGATACTCAAGA 2404 Query 31649 GTTTGTAGAGATGCTGGAGAATGCAGGTTTGCCAAAAGACCAGGCGCGGGCGATTTCTAT 31708 || || || | || || || || || ||||| ||||| ||||| | ||||||||||| Sbjct 2405 ATTCGTCGAAACACTAGAAAACGCTGGGTTGCCGAAAGATCAGGCAAGAGCGATTTCTAT 2464 Query 31709 CGCCGTACGCAAGTCTCACGAGGTGGCGGATGTGGCGAC 31747 ||| || |||||||| ||||| ||||||||||| ||||| Sbjct 2465 CGCTGTTCGCAAGTCACACGAAGTGGCGGATGTAGCGAC 2503 >seq170 Length=159274 Score = 150 bits (166), Expect = 6e-32 Identities = 187/255 (73%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 23492 GTGTTTCCCGCCTCGGCCAGATAGTACAGCAAGCTGCGAAACTGCTCTTTGGGATACGCC 23551 || |||||| ||| || | ||| |||| || ||| || ||||||||||| || ||| Sbjct 6931 GTATTTCCCCGCTCTGCGATATAATACATCAGGCTACGGAACTGCTCTTTCGGTATTGCC 6990 Query 23552 CACTGT-TCGAGCAATCCGGCCAGTTCGTTAACCAGCTCCAGCATATCACGGGTACGAAT 23610 || | | ||||| | ||| | || || ||| |||||||||||| || || || || Sbjct 6991 CATAGGATTGAGCAGACGGGCGATATCAGTAGCCAACTCCAGCATATCTCGCGTTCGGAT 7050 Query 23611 GTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAGGATTTCGTCATCCGG 23670 ||||||||| || | || |||||||| ||| | ||||| | ||| ||||| |||||||| Sbjct 7051 GTGCTTCTGTACTAACTCTAGCAGCGCTACCGGCCGATGAGACAGTATTTCATCATCCGG 7110 Query 23671 TATTGCAGTGATATCGACCAGCGGAAATGCCTGATGATAAACCGTGGCCGCCAATTCTGG 23730 || || |||||||| |||||||||||||| | ||| | | | |||| ||| || Sbjct 7111 CATAGCCGTGATATCAACCAGCGGAAATGCTCGTATATAGAATGATTCTGCCAGTTCAGG 7170 Query 23731 CTCAGCAAAACAGTC 23745 |||||||| || || Sbjct 7171 GTCAGCAAAGCAATC 7185 >seq1308 Length=4734 Score = 145 bits (160), Expect = 3e-30 Identities = 241/344 (70%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 23412 GCTCTGCAATCGTCATGGCGTCCTCCCGATAGCGCGGCGTTTTTTCTGCCAGCGCGC-GA 23470 |||||||||| |||||| ||||||||| ||| | | | ||| || | || | Sbjct 1018 GCTCTGCAATGGTCATGATGTCCTCCCGGTAGT-CAGTGGCTTTGGTGGCGATATGCTGT 960 Query 23471 ATGAATTTTTCCCCTTCAACGG---TGTTTCCCGCCTCGGCCAGATAGTACAGCAAGCTG 23527 | ||||| | ||||| ||| | |||||| ||| || | |||||||| || ||| Sbjct 959 AAGAATTG---CGCTTCATCGGAAGTATTTCCCCGCTCTGCAATATAGTACATCAGGCTA 903 Query 23528 CGAAACTGCTCTTTGGGATACGCCCACTGTTCGAGCAATCCGGCCAGTTCGTTAACCAGC 23587 || ||||||||||| || |||||| | | ||| | |||| || | ||| Sbjct 902 CGGAACTGCTCTTTCGGTATCGCCCATAGATTGAGTGGACGAGCCATATCAGCAGACAGT 843 Query 23588 TCCAGCATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGA 23647 || |||||||| || || || ||||||||||| || | || ||||| || ||||| ||| Sbjct 842 TCTAGCATATCCCGCGTTCGGATGTGCTTCTGAACTAACTCTAGCAGAGCTACCCGCCGA 783 Query 23648 TGGGTCAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGCCTGATGA 23707 |||| ||| ||||| |||||||| || || || ||||| |||||||| ||||| || | Sbjct 782 TGGGACAGTATTTCATCATCCGGCATAGCTGTAATATCAACCAGCGGGAATGCTTGCCTA 723 Query 23708 TAAACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACA 23751 || | | | |||| ||| || |||| ||| || || || || Sbjct 722 TAGATTGATTCTGCCAGTTCAGGGTCAGTAAAGCAATCGAGCCA 679 Score = 82.4 bits (90), Expect = 3e-11 Identities = 98/132 (74%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 31619 CATGGGCCAAGTCGCATTTGATAC---GCAAGAGTTTGTAGAGATGCTGGAGAATGCAGG 31675 |||||||||||| ||||||||||| ||| | || | |||| || || | || || Sbjct 3918 CATGGGCCAAGTTGCATTTGATACATTGCAGGCGTCAGAAGAG---CTTGAAACCGCTGG 3862 Query 31676 TTTGCCAAAAGACCAGGCGCGGGCGATTTCTATCGCCGTACGCAAGTCTCACGAGGTGGC 31735 | | | ||| || || |||||||||| ||| ||||||||||||||| || ||||| Sbjct 3861 CATCTCTAGAGAGCAAGCCAGGGCGATTTCGCTCGTCGTACGCAAGTCTCATGAAGTGGC 3802 Query 31736 GGATGTGGCGAC 31747 |||||||| || Sbjct 3801 TGATGTGGCTAC 3790 >seq1391 Length=1689 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 2508 CCATGGGCCAAGTCGCATTTGATAC---GCAAGAGTTCGTCGAGACGCTGGAGAACGCCG 2564 ||||||||||||||||||||||||| ||| | || | ||| || || | ||| | Sbjct 392 CCATGGGCCAAGTCGCATTTGATACATTGCAGGCGTCAGAAGAG---CTTGAAACCGCTG 448 Query 2565 GTTTACCGAAAGACCAGGCGCGGGCGATTTCTATCGCTGTTCGCAAGTCTCACGAGGTGG 2624 | | | | ||| ||||| |||| ||||| ||| ||| ||||||||||| ||||||| Sbjct 449 GCATCTCTAGAGAGCAGGCTAGGGCTATTTCGCTCGTTGTGCGCAAGTCTCATGAGGTGG 508 Query 2625 CGGATGTGGCGACC 2638 |||||||||| ||| Sbjct 509 CGGATGTGGCTACC 522 Score = 91.5 bits (100), Expect = 5e-14 Identities = 111/149 (74%), Gaps = 7/149 (5%) Strand=Plus/Plus Query 31603 AAACCAGAGGGTTCCACATGGGCCAAGTCGCATTTGATAC---GCAAGAGTTTGTAGAGA 31659 |||| |||| || | |||||||||||||||||||||||| ||| | || | |||| Sbjct 378 AAACAGGAGGATTTC-CATGGGCCAAGTCGCATTTGATACATTGCAGGCGTCAGAAGAG- 435 Query 31660 TGCTGGAGAATGCAGGTTTGCCAAAAGACCAGGCGCGGGCGATTTCTATCGCCGTACGCA 31719 || || | || || | | | ||| ||||| |||| ||||| ||| || |||| Sbjct 436 --CTTGAAACCGCTGGCATCTCTAGAGAGCAGGCTAGGGCTATTTCGCTCGTTGTGCGCA 493 Query 31720 AGTCTCACGAGGTGGCGGATGTGGCGACC 31748 ||||||| ||||||||||||||||| ||| Sbjct 494 AGTCTCATGAGGTGGCGGATGTGGCTACC 522 >seq429 Length=112147 Score = 91.5 bits (100), Expect = 5e-14 Identities = 110/147 (75%), Gaps = 7/147 (5%) Strand=Plus/Minus Query 2494 ACAGGAGAACCAGCCCATGGGCCAAGTCGCATTTGATAC---GCAAGAGTTCGTCGAGAC 2550 ||||||| | | || ||||||||||||||||||||||| ||| | || | ||| Sbjct 5171 ACAGGAGGATCC-CCTATGGGCCAAGTCGCATTTGATACATTGCAGGCGTCAGAAGAG-- 5115 Query 2551 GCTGGAGAACGCCGGTTTACCGAAAGACCAGGCGCGGGCGATTTCTATCGCTGTTCGCAA 2610 || || | ||| || | | | ||| || |||||||||||||| ||| ||| ||||| Sbjct 5114 -CTTGAAACCGCTGGCATCTCTAGAGAGCAAGCGCGGGCGATTTCGCTCGTTGTACGCAA 5056 Query 2611 GTCTCACGAGGTGGCGGATGTGGCGAC 2637 ||| || || |||||||||||||| || Sbjct 5055 GTCGCATGAAGTGGCGGATGTGGCTAC 5029 Score = 91.5 bits (100), Expect = 5e-14 Identities = 106/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 31609 GAGGGTTCCACATGGGCCAAGTCGCATTTGATAC---GCAAGAGTTTGTAGAGATGCTGG 31665 |||| | || ||||||||||||||||||||||| ||| | || | |||| || | Sbjct 5167 GAGGATCCCCTATGGGCCAAGTCGCATTTGATACATTGCAGGCGTCAGAAGAG---CTTG 5111 Query 31666 AGAATGCAGGTTTGCCAAAAGACCAGGCGCGGGCGATTTCTATCGCCGTACGCAAGTCTC 31725 | | || || | | | ||| || |||||||||||||| ||| ||||||||||| | Sbjct 5110 AAACCGCTGGCATCTCTAGAGAGCAAGCGCGGGCGATTTCGCTCGTTGTACGCAAGTCGC 5051 Query 31726 ACGAGGTGGCGGATGTGGCGAC 31747 | || |||||||||||||| || Sbjct 5050 ATGAAGTGGCGGATGTGGCTAC 5029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166793381291088