Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq512 277 1e-69 seq162 268 7e-67 >seq512 Length=181763 Score = 277 bits (306), Expect = 1e-69 Identities = 393/550 (71%), Gaps = 2/550 (0%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||||||||| || || ||||| | || ||||| || | || ||||||||| | || | Sbjct 52125 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 52184 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 || | || ||| ||| |||| ||||| ||| |||||| ||||| || ||||| | Sbjct 52185 GGAATCGGTTAAGTGACGGCGAACGTCATTTTATTTCACATGTCTTGGCTTTTTTTGCGG 52244 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || ||||| || |||||||||||| ||||||| || | || ||||| ||| | Sbjct 52245 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 52304 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | || || ||||| || || || || || ||||||||||| ||||| |||||||| |||| Sbjct 52305 CTGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 52364 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 | ||| | || ||||| || || |||| ||| | ||||||||| | || |||| Sbjct 52365 ATAGTTTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATATCTATTTAATG 52424 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | || ||||| || || ||| ||| ||| ||||| ||||| | ||||| | || Sbjct 52425 CTATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCATGGAT-ATCA 52483 Query 61466 GTACA-ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 || | |||| ||||||||||| | | || || || | ||||| ||| | || Sbjct 52484 TCGCATTCAGCTAATTTTGGTGAACGTGTCATAGCTTTCGCTGCCGTCGAAGGTATTTTC 52543 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 || ||||| || || | || |||||| | |||||||||||| | ||||| ||| | Sbjct 52544 TTTAGTGGCAGCTTCGCATCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTA 52603 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 || ||| ||||| ||||||||||||| || ||| | || ||||| ||||| || || Sbjct 52604 ACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTACACTGTGAATTTGCGGTATTA 52663 Query 61645 CTATTCAAAC 61654 | || |||| Sbjct 52664 ATGTTTAAAC 52673 >seq162 Length=626193 Score = 268 bits (296), Expect = 7e-67 Identities = 1042/1620 (64%), Gaps = 51/1620 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| || ||||| || | ||| || || | ||| || || || || ||||| ||||| Sbjct 500933 ATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCGGT 500874 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | ||| | |||| |||| ||||| || || |||||||| ||||| | || | Sbjct 500873 TTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGTTG 500814 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || ||||| || || || || || || || ||||| || || ||||| ||||||| Sbjct 500813 AGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCAT 500754 Query 65257 GTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 || ||| | ||| || |||| || ||||| || || || |||| || | Sbjct 500753 GTTGATGGTT-GACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTA--TGCT 500697 Query 65316 TT--GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGC-AATAATGCGATTACGCA 65372 || || || | || |||| || | ||| || ||| |||| |||| | | || || Sbjct 500696 TTCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTT-CA 500638 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | || ||| | ||||| || | | || || || ||| ||| |||||| || Sbjct 500637 TGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGA 500578 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||| || |||||||| || || | || || || ||| || ||||| || | Sbjct 500577 TAAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACT 500518 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 || |||| || |||||||| |||||||| || || ||||| ||||| || | ||| || | Sbjct 500517 CATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAAT 500458 Query 65553 TTCGCAATCCGTTCATTTCAATGTTG---TGACGCAATTCGTCCCAGTTCCACATCGGTT 65609 | |||| ||| | ||| ||||| | | | | || || || | ||||| | | | Sbjct 500457 TGCGCACTCCATAACTTTTAATGTCGCTTTTAAG--ATCCGACCAA-TTCCATA--GATC 500403 Query 65610 TATCGTCGAC--ATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | | || |||| |||||||| | ||| ||| | | |||| | || Sbjct 500402 AGTAGGCGTTTTATCC------CACATATCATATTGAAGGATAGCTTTACTAACTGGACT 500349 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGC 65727 ||| | | |||||| | | | ||||| | || ||| || || | | Sbjct 500348 ACCTTCATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTC 500289 Query 65728 GGCAAAATAAATGGTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCAT---CGCTCT 65783 | |||| || || || ||||| || ||| ||| || || ||| |||| | Sbjct 500288 ACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAG----CGAGCAGCATTTTCGCTTT 500233 Query 65784 CGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGG 65843 | || || || ||| | | | | ||| || | ||||| || || | ||| || | Sbjct 500232 CATAGGGGTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTG 500173 Query 65844 GACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAA 65903 |||||||||| ||||| || ||| | || || | || ||||||||||||||||| | Sbjct 500172 GACGATGACGAAAATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTA 500113 Query 65904 TGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAA 65962 | || | || ||| | | | | | | | | | |||| |||||| | Sbjct 500112 TTTTGTTGAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGA-AAATCATAT 500054 Query 65963 TGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022 |||||| || | || |||||| | | |||| ||||| | Sbjct 500053 TGTTTA------TCTGTCGTT---------ACAAACATATTCAACGCAATTGATGCTAAA 500009 Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 ||||| || ||||| || |||| | ||||| ||||| ||||| || |||| |||||| Sbjct 500008 TTGCAAACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTG 499949 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 || ||| ||||| | ||||||||||||||| |||||||| || ||||| ||||| | | Sbjct 499948 CATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGC 499889 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGG-ACTCAATGATGGCGTGCCAAAGAGCGCGTGC 66201 ||||| ||||| |||||||| ||||||| ||| || || ||| | | | || || Sbjct 499888 ATGTAAGGAGTTCCGGTCTCTACTTGGGCACTGCAT-ATTGCGAACTACTAGTCACGAGC 499830 Query 66202 CTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGA 66261 || | || ||| | || | | ||| || | ||| | || || Sbjct 499829 TTTTATTGTTTTGTTCGCTTTGCCCTCGTCTTCATATTTCATGTATAATCTATCAAATTT 499770 Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 || || | | ||| ||| | || || || || |||||||| || ||||||| | Sbjct 499769 GTCTCCATAAATTTCACACAAGCCAGGGCATTTATGGGGACACATTAGAGACCAATGCTC 499710 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 ||| || || | ||| || | ||| || ||||| || || || || | ||| || Sbjct 499709 ATCAGCCTCAACTCTTTTCATGAACAAATCGGGGATCCACAGAGCATAAAATAAATCCCG 499650 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 ||| || | ||||| | || ||| || ||||| || || || || || || || Sbjct 499649 TGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGC 499590 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 |||||| || || | ||| || || || | ||| |||||| || |||||||||||||| Sbjct 499589 ATGCCAAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGAC 499530 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || || || ||||||||||| | ||| ||||| || || || |||| |||| || | Sbjct 499529 ATAACGGGCAACATTGTTGAACAGACGTAACATAGGAACAAGACCGTCAGATACTTCACT 499470 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 | || || | |||| ||| ||||| |||| ||| ||||| || ||||| Sbjct 499469 ATTACCAGATATCTTAGTCCCTCTTGCTCGTATGCAATGAATATTTAGACCTATTCCACC 499410 Query 66622 GGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 ||||| ||| || || |||||| | | | | | | | || || ||||||||||| Sbjct 499409 GGCCGCCTTAGAAATTTTAGCACATTGGTCTATAGCCTTCATAATACCATCAATGGAGTC 499350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559636908640