Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq512 277 1e-69
seq162 268 7e-67
>seq512
Length=181763
Score = 277 bits (306), Expect = 1e-69
Identities = 393/550 (71%), Gaps = 2/550 (0%)
Strand=Plus/Plus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
|||||||||| || || ||||| | || ||||| || | || ||||||||| | || |
Sbjct 52125 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 52184
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
|| | || ||| ||| |||| ||||| ||| |||||| ||||| || ||||| |
Sbjct 52185 GGAATCGGTTAAGTGACGGCGAACGTCATTTTATTTCACATGTCTTGGCTTTTTTTGCGG 52244
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| || || ||||| || |||||||||||| ||||||| || | || ||||| ||| |
Sbjct 52245 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 52304
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
| || || ||||| || || || || || ||||||||||| ||||| |||||||| ||||
Sbjct 52305 CTGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 52364
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
| ||| | || ||||| || || |||| ||| | ||||||||| | || ||||
Sbjct 52365 ATAGTTTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATATCTATTTAATG 52424
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
| || ||||| || || ||| ||| ||| ||||| ||||| | ||||| | ||
Sbjct 52425 CTATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCATGGAT-ATCA 52483
Query 61466 GTACA-ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524
|| | |||| ||||||||||| | | || || || | ||||| ||| | ||
Sbjct 52484 TCGCATTCAGCTAATTTTGGTGAACGTGTCATAGCTTTCGCTGCCGTCGAAGGTATTTTC 52543
Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584
|| ||||| || || | || |||||| | |||||||||||| | ||||| ||| |
Sbjct 52544 TTTAGTGGCAGCTTCGCATCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTA 52603
Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644
|| ||| ||||| ||||||||||||| || ||| | || ||||| ||||| || ||
Sbjct 52604 ACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTACACTGTGAATTTGCGGTATTA 52663
Query 61645 CTATTCAAAC 61654
| || ||||
Sbjct 52664 ATGTTTAAAC 52673
>seq162
Length=626193
Score = 268 bits (296), Expect = 7e-67
Identities = 1042/1620 (64%), Gaps = 51/1620 (3%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
|||||| || ||||| || | ||| || || | ||| || || || || ||||| |||||
Sbjct 500933 ATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCGGT 500874
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196
|| | ||| | |||| |||| ||||| || || |||||||| ||||| | || |
Sbjct 500873 TTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGTTG 500814
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| ||||| || || || || || || || ||||| || || ||||| |||||||
Sbjct 500813 AGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCAT 500754
Query 65257 GTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315
|| ||| | ||| || |||| || ||||| || || || |||| || |
Sbjct 500753 GTTGATGGTT-GACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTA--TGCT 500697
Query 65316 TT--GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGC-AATAATGCGATTACGCA 65372
|| || || | || |||| || | ||| || ||| |||| |||| | | || ||
Sbjct 500696 TTCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTT-CA 500638
Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432
| || ||| | ||||| || | | || || || ||| ||| |||||| ||
Sbjct 500637 TGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGA 500578
Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492
||||| || |||||||| || || | || || || ||| || ||||| || |
Sbjct 500577 TAAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACT 500518
Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552
|| |||| || |||||||| |||||||| || || ||||| ||||| || | ||| || |
Sbjct 500517 CATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAAT 500458
Query 65553 TTCGCAATCCGTTCATTTCAATGTTG---TGACGCAATTCGTCCCAGTTCCACATCGGTT 65609
| |||| ||| | ||| ||||| | | | | || || || | ||||| | | |
Sbjct 500457 TGCGCACTCCATAACTTTTAATGTCGCTTTTAAG--ATCCGACCAA-TTCCATA--GATC 500403
Query 65610 TATCGTCGAC--ATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667
| | || |||| |||||||| | ||| ||| | | |||| | ||
Sbjct 500402 AGTAGGCGTTTTATCC------CACATATCATATTGAAGGATAGCTTTACTAACTGGACT 500349
Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGC 65727
||| | | |||||| | | | ||||| | || ||| || || | |
Sbjct 500348 ACCTTCATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTC 500289
Query 65728 GGCAAAATAAATGGTCTCGAAAATGCGTCGATT-AAGTTCACGTGCCTCAT---CGCTCT 65783
| |||| || || || ||||| || ||| ||| || || ||| |||| |
Sbjct 500288 ACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAG----CGAGCAGCATTTTCGCTTT 500233
Query 65784 CGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGG 65843
| || || || ||| | | | | ||| || | ||||| || || | ||| || |
Sbjct 500232 CATAGGGGTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTG 500173
Query 65844 GACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAA 65903
|||||||||| ||||| || ||| | || || | || ||||||||||||||||| |
Sbjct 500172 GACGATGACGAAAATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTA 500113
Query 65904 TGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAA 65962
| || | || ||| | | | | | | | | | |||| |||||| |
Sbjct 500112 TTTTGTTGAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGA-AAATCATAT 500054
Query 65963 TGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022
|||||| || | || |||||| | | |||| ||||| |
Sbjct 500053 TGTTTA------TCTGTCGTT---------ACAAACATATTCAACGCAATTGATGCTAAA 500009
Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082
||||| || ||||| || |||| | ||||| ||||| ||||| || |||| ||||||
Sbjct 500008 TTGCAAACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTG 499949
Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142
|| ||| ||||| | ||||||||||||||| |||||||| || ||||| ||||| | |
Sbjct 499948 CATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGC 499889
Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGG-ACTCAATGATGGCGTGCCAAAGAGCGCGTGC 66201
||||| ||||| |||||||| ||||||| ||| || || ||| | | | || ||
Sbjct 499888 ATGTAAGGAGTTCCGGTCTCTACTTGGGCACTGCAT-ATTGCGAACTACTAGTCACGAGC 499830
Query 66202 CTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGA 66261
|| | || ||| | || | | ||| || | ||| | || ||
Sbjct 499829 TTTTATTGTTTTGTTCGCTTTGCCCTCGTCTTCATATTTCATGTATAATCTATCAAATTT 499770
Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321
|| || | | ||| ||| | || || || || |||||||| || ||||||| |
Sbjct 499769 GTCTCCATAAATTTCACACAAGCCAGGGCATTTATGGGGACACATTAGAGACCAATGCTC 499710
Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381
||| || || | ||| || | ||| || ||||| || || || || | ||| ||
Sbjct 499709 ATCAGCCTCAACTCTTTTCATGAACAAATCGGGGATCCACAGAGCATAAAATAAATCCCG 499650
Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441
||| || | ||||| | || ||| || ||||| || || || || || || ||
Sbjct 499649 TGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGC 499590
Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501
|||||| || || | ||| || || || | ||| |||||| || ||||||||||||||
Sbjct 499589 ATGCCAAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGAC 499530
Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561
|| || || ||||||||||| | ||| ||||| || || || |||| |||| || |
Sbjct 499529 ATAACGGGCAACATTGTTGAACAGACGTAACATAGGAACAAGACCGTCAGATACTTCACT 499470
Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621
| || || | |||| ||| ||||| |||| ||| ||||| || |||||
Sbjct 499469 ATTACCAGATATCTTAGTCCCTCTTGCTCGTATGCAATGAATATTTAGACCTATTCCACC 499410
Query 66622 GGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681
||||| ||| || || |||||| | | | | | | | || || |||||||||||
Sbjct 499409 GGCCGCCTTAGAAATTTTAGCACATTGGTCTATAGCCTTCATAATACCATCAATGGAGTC 499350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397559636908640
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