Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq126 136 6e-30 seq77 102 1e-19 seq95 93.3 6e-17 seq143 80.6 4e-13 >seq126 Length=623759 Score = 136 bits (150), Expect = 6e-30 Identities = 175/229 (76%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 227177 GTACAAAGAGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 227234 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 227235 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 227291 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | ||||| |||| |||| | ||| ||| || |||| ||| | || |||||||||||| Sbjct 227292 TTACCCGTACCTCTCGGTCTAGGAAATACACA--TTGA-TACGTTCATTGTAGCGCGCGT 227348 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||| ||||||| ||||| || Sbjct 227349 GCAGCCCAGGACATCTAAGGGCATCACAGACCAGTTATTG-CTCAATCT 227396 >seq77 Length=763242 Score = 102 bits (112), Expect = 1e-19 Identities = 91/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 ||||| |||| | |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 377463 TTACCTGGACTTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 377519 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 377520 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 377567 >seq95 Length=1042479 Score = 93.3 bits (102), Expect = 6e-17 Identities = 155/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 ||||| ||||||||||| |||| ||||| || ||| ||| | |||||| |||||| || Sbjct 252486 CAAAGAGCAGGGACGTAATCAATGCGAG-TTAATGCCTCACACTTACTGGGAATT-CCAA 252543 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA---TTA 120 ||| | | |||| || || | | ||||| | || || || | | || ||| Sbjct 252544 GTTCAT-ATGAACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTACAGCGGTTTA 252600 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGCG 179 |||| |||| ||| | ||| ||| | ||||| ||| | | |||||||||| ||| Sbjct 252601 CCCGCACCTCTCGATCTAGGAAATACAG--GTTGA-TACTTTTATTGTAGCGCGCATGCA 252657 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 |||||| |||| |||| |||||||||||| ||||| Sbjct 252658 GCCCAGGACATTTAAGCGCATCACAGACCGGTTAT 252692 >seq143 Length=1271457 Score = 80.6 bits (88), Expect = 4e-13 Identities = 74/90 (82%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 ||||||| |||| | || | ||| ||| ||| |||| ||| | || |||||||||||| Sbjct 269022 TTACCCGAACCTCTTGGTCTAGGAAATACACT--TTGA-TACTTTCATTGTAGCGCGCGT 269078 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGA 206 || |||||| |||||||||||||||||||| Sbjct 269079 GCAGCCCAGGACATCTAAGGGCATCACAGA 269108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751971399090