Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq126 136 6e-30
seq77 102 1e-19
seq95 93.3 6e-17
seq143 80.6 4e-13
>seq126
Length=623759
Score = 136 bits (150), Expect = 6e-30
Identities = 175/229 (76%), Gaps = 13/229 (6%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||| ||||||||||| |||| ||||| || ||||||| | |||||| |||||| |
Sbjct 227177 GTACAAAGAGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 227234
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118
| ||| | | |||| || || | | ||||| | || || || | |||| | |
Sbjct 227235 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 227291
Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176
| ||||| |||| |||| | ||| ||| || |||| ||| | || ||||||||||||
Sbjct 227292 TTACCCGTACCTCTCGGTCTAGGAAATACACA--TTGA-TACGTTCATTGTAGCGCGCGT 227348
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|| |||||| |||||||||||||||||||||| ||||||| ||||| ||
Sbjct 227349 GCAGCCCAGGACATCTAAGGGCATCACAGACCAGTTATTG-CTCAATCT 227396
>seq77
Length=763242
Score = 102 bits (112), Expect = 1e-19
Identities = 91/109 (83%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176
||||| |||| | |||| | ||| ||| || ||||| ||| | || ||||||||||||
Sbjct 377463 TTACCTGGACTTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 377519
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|| |||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 377520 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 377567
>seq95
Length=1042479
Score = 93.3 bits (102), Expect = 6e-17
Identities = 155/215 (72%), Gaps = 12/215 (6%)
Strand=Plus/Plus
Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63
||||| ||||||||||| |||| ||||| || ||| ||| | |||||| |||||| ||
Sbjct 252486 CAAAGAGCAGGGACGTAATCAATGCGAG-TTAATGCCTCACACTTACTGGGAATT-CCAA 252543
Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA---TTA 120
||| | | |||| || || | | ||||| | || || || | | || |||
Sbjct 252544 GTTCAT-ATGAACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTACAGCGGTTTA 252600
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGCG 179
|||| |||| ||| | ||| ||| | ||||| ||| | | |||||||||| |||
Sbjct 252601 CCCGCACCTCTCGATCTAGGAAATACAG--GTTGA-TACTTTTATTGTAGCGCGCATGCA 252657
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214
|||||| |||| |||| |||||||||||| |||||
Sbjct 252658 GCCCAGGACATTTAAGCGCATCACAGACCGGTTAT 252692
>seq143
Length=1271457
Score = 80.6 bits (88), Expect = 4e-13
Identities = 74/90 (82%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176
||||||| |||| | || | ||| ||| ||| |||| ||| | || ||||||||||||
Sbjct 269022 TTACCCGAACCTCTTGGTCTAGGAAATACACT--TTGA-TACTTTCATTGTAGCGCGCGT 269078
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGA 206
|| |||||| ||||||||||||||||||||
Sbjct 269079 GCAGCCCAGGACATCTAAGGGCATCACAGA 269108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751971399090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |