Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq5 122 1e-25
seq4 114 2e-23
seq566 111 3e-22
seq247 104 4e-20
seq126 93.3 7e-17
seq77 91.5 2e-16
seq7 80.6 4e-13
>seq5
Length=2004403
Score = 122 bits (134), Expect = 1e-25
Identities = 87/100 (87%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||| | ||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 110307 GTCCCATTCGTTATCAGAATTAAGCAGATAAATCACTCCAGGAACTAAGAACGGCCATGC 110248
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| ||| | | |||||||||||||| ||||
Sbjct 110247 ACCACCACCCACAGATTTGATAAAGAGCTATCAATTTGTC 110208
>seq4
Length=3302515
Score = 114 bits (126), Expect = 2e-23
Identities = 95/115 (83%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 142 CTATTTA-GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
||||||| | | || | ||| ||||| || ||||| ||||||| ||||||||||||||
Sbjct 1209717 CTATTTATGTATATTTAAGTCCCGTTCATTGTCGGAGTTAACCATACAAATCACTCCACG 1209776
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|||| |||||||||||||||||| ||| | | || ||||||||||||||||||
Sbjct 1209777 AACTGGAAACGGCCATGCACCACCAACCAAAAACTCGAGAAAGAGCTATCAATCT 1209831
>seq566
Length=165313
Score = 111 bits (122), Expect = 3e-22
Identities = 81/94 (86%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||| ||||||||||| |||||||| |||||||| ||||| ||||||||| | ||||||
Sbjct 158156 GTCTTTTTCGTTATCGGTATTAACCAAACAAATCAATCCACGAACTAAGAAAGCCCATGC 158215
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252
||||||||||| | | || ||| |||||||||||
Sbjct 158216 ACCACCACCCACAAATTCGAGATAGAGCTATCAA 158249
>seq247
Length=481312
Score = 104 bits (114), Expect = 4e-20
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||||||||||||||| || ||||| ||||||||||| ||| ||||| || |||||||
Sbjct 371862 GTCTCGTTCGTTATCGAAAATAACCCGACAAATCACTTCACGAACTATGAGCGGCCATAT 371803
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|| ||||||||| | || |||||||| |||||||
Sbjct 371802 ACTGCCACCCATAAATTCGAGAAAGAGTTATCAAT 371768
>seq126
Length=623759
Score = 93.3 bits (102), Expect = 7e-17
Identities = 86/106 (81%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||
Sbjct 227333 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCAGTTATTG-CTC 227391
Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
|| || ||| | ||| || || | | ||| | |||||||| ||
Sbjct 227392 AATCT--CATTATTGCTAGACGCAATTTGTCTATTTAAGAAGCTAG 227435
>seq77
Length=763242
Score = 91.5 bits (100), Expect = 2e-16
Identities = 60/65 (92%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 377504 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 377562
Query 76 AAACT 80
|| ||
Sbjct 377563 AATCT 377567
>seq7
Length=2509156
Score = 80.6 bits (88), Expect = 4e-13
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||| | ||||||||||||||||||||||| || |||| || |||||||| ||| ||||
Sbjct 550210 TCCACGAGCTAAGAACGGCCATGCACCACCAGCCGTAGATTCGAGAAAGAGTTATTAATC 550269
Query 255 TGTC 258
||||
Sbjct 550270 TGTC 550273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796769695206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |