Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-25 seq4 114 2e-23 seq566 111 3e-22 seq247 104 4e-20 seq126 93.3 7e-17 seq77 91.5 2e-16 seq7 80.6 4e-13 >seq5 Length=2004403 Score = 122 bits (134), Expect = 1e-25 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| | ||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 110307 GTCCCATTCGTTATCAGAATTAAGCAGATAAATCACTCCAGGAACTAAGAACGGCCATGC 110248 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| | | |||||||||||||| |||| Sbjct 110247 ACCACCACCCACAGATTTGATAAAGAGCTATCAATTTGTC 110208 >seq4 Length=3302515 Score = 114 bits (126), Expect = 2e-23 Identities = 95/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 142 CTATTTA-GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||| | | || | ||| ||||| || ||||| ||||||| |||||||||||||| Sbjct 1209717 CTATTTATGTATATTTAAGTCCCGTTCATTGTCGGAGTTAACCATACAAATCACTCCACG 1209776 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||| |||||||||||||||||| ||| | | || |||||||||||||||||| Sbjct 1209777 AACTGGAAACGGCCATGCACCACCAACCAAAAACTCGAGAAAGAGCTATCAATCT 1209831 >seq566 Length=165313 Score = 111 bits (122), Expect = 3e-22 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||||||||||| |||||||| |||||||| ||||| ||||||||| | |||||| Sbjct 158156 GTCTTTTTCGTTATCGGTATTAACCAAACAAATCAATCCACGAACTAAGAAAGCCCATGC 158215 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||| | | || ||| ||||||||||| Sbjct 158216 ACCACCACCCACAAATTCGAGATAGAGCTATCAA 158249 >seq247 Length=481312 Score = 104 bits (114), Expect = 4e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||| || ||||| ||||||||||| ||| ||||| || ||||||| Sbjct 371862 GTCTCGTTCGTTATCGAAAATAACCCGACAAATCACTTCACGAACTATGAGCGGCCATAT 371803 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 || ||||||||| | || |||||||| ||||||| Sbjct 371802 ACTGCCACCCATAAATTCGAGAAAGAGTTATCAAT 371768 >seq126 Length=623759 Score = 93.3 bits (102), Expect = 7e-17 Identities = 86/106 (81%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||| Sbjct 227333 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCAGTTATTG-CTC 227391 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | ||| | |||||||| || Sbjct 227392 AATCT--CATTATTGCTAGACGCAATTTGTCTATTTAAGAAGCTAG 227435 >seq77 Length=763242 Score = 91.5 bits (100), Expect = 2e-16 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 377504 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 377562 Query 76 AAACT 80 || || Sbjct 377563 AATCT 377567 >seq7 Length=2509156 Score = 80.6 bits (88), Expect = 4e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||| | ||||||||||||||||||||||| || |||| || |||||||| ||| |||| Sbjct 550210 TCCACGAGCTAAGAACGGCCATGCACCACCAGCCGTAGATTCGAGAAAGAGTTATTAATC 550269 Query 255 TGTC 258 |||| Sbjct 550270 TGTC 550273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796769695206