Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq31 183 5e-44 seq27 84.2 4e-14 >seq31 Length=1259875 Score = 183 bits (202), Expect = 5e-44 Identities = 165/206 (80%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| || ||||| ||||||| | |||||| | || | |||||||||||||||| || Sbjct 455604 GTCATTAGCAGGGTGAAACTAATCCGTCTCACGGTGGCCCAAACCCAGCTCACGTTTACT 455545 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | | | |||| ||||| ||||| | || || || ||| |||||||||||||||| Sbjct 455544 -TGAATAGGTGCACAATTCAACGTTCGTCGGGTTTTGTTTCACAATGATAGGAAGAGCCG 455486 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| ||||||||| |||| ||||| | || |||| ||||| ||||||||||||||||| Sbjct 455485 ACATCAAAGGATCAATAAGCGACGTCACAATAAACGTTTGGCCGCCACAAGCCAGTTATC 455426 Query 210 CCTGTGGTAACTTTTCTGGCACCTCT 235 | |||||||||||||| | || |||| Sbjct 455425 CTTGTGGTAACTTTTCCGACAACTCT 455400 >seq27 Length=1845959 Score = 84.2 bits (92), Expect = 4e-14 Identities = 84/108 (78%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA--GCAACGTCGC 177 |||| | |||| ||||||| ||||||||||| | || |||||| || | |||||| Sbjct 94909 AATTTTTCTTCACAATGATAGAAAGAGCCGACACCAAACGATCAACAATGGTGACGTCGG 94968 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 || | ||||| ||||| |||| |||||||||||||| |||||| || Sbjct 94969 CATTAGCGCTTCGCTGCAACAATTCAGTTATCCCTGTGTTAACTTCTC 95016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854366456256