Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq909 315 3e-83 >seq909 Length=122292 Score = 315 bits (348), Expect = 3e-83 Identities = 408/554 (74%), Gaps = 20/554 (4%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTT--GATTTCGGTAAGCTTG-TGGGCCCCCTAGACCATCCAGT 108 ||| ||||| |||||| | |||| |||| || | | | |||||| | | ||| Sbjct 24925 CGGTATTCGTAGTTTGCATCGGATT--GGTAGTCTGGATAAGACCCCTAACCGAAACAGC 24982 Query 109 GCTCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACC 166 |||||||| ||| || ||| |||| | |||| |||||||| ||||| |||||||| Sbjct 24983 GCTCTACCCCCGAAGATGAATTCACGAGGCGCT--ACCTAAATAGCTTTCGAGGAGAACC 25040 Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 ||||||| | ||||||||||||||||||||||| ||||| ||||||| || | ||||| Sbjct 25041 AGCTATCTCCCGGTTTGATTGGCCTTTCACCCCTAACCACAAGTCATCCGCTAATTTTTC 25100 Query 227 AACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATA 286 ||| | ||| |||||||||||||| || ||||| ||||||||||| ||||| || Sbjct 25101 AACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCTAACCTTCAACCTGCTCATGGCTA 25160 Query 287 GATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCG 346 |||||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| Sbjct 25161 GATCACCGGGTTTCGGGTCTATACCTTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCC 25219 Query 347 CTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTT 406 |||||||| || | |||||||| || ||| || || |||| | | |||| | Sbjct 25220 CTACGGCTCCCTTATTACAGTTAACCTTGCTACA-AAATATAAGTCGCTGACCCATTATA 25278 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||||||| |||| ||||| | || | || ||||| || | ||||| | | Sbjct 25279 CAAAAGGTACGCAGTCACATTGTTGTTTTAA--------TGCTCCTACTGCTTGTACGTA 25330 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGG 525 || ||||||||| |||||||||||||| | | ||||| ||||||||||||||||||||| Sbjct 25331 CACAGTTTCAGGTTCTATTTCACTCCCCTCGCCGGGGTTCTTTTCACCTTTCCCTCACGG 25390 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 |||| || | |||||||| | |||||||||||| ||| || ||||||| || || Sbjct 25391 TACTAGTTCACTATCGGTTAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCGTCTT 25450 Query 586 CACACGAAATTTCA 599 || || | || ||| Sbjct 25451 CAAACAAGATATCA 25464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817528641024