Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq126 140 6e-31 seq77 102 2e-19 seq95 98.7 2e-18 seq143 73.4 7e-11 >seq126 Length=623759 Score = 140 bits (154), Expect = 6e-31 Identities = 167/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||| Sbjct 227396 AGATTGAG-CAATAACTGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 227338 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| | ||| | || || ||| | ||| |||| |||||| | | || | Sbjct 227337 AATGAACGTATCAATGTGT--ATTTCCTAGACCGAGAGGTACGGGTAAACCGCTGAACCA 227280 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 227279 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 227221 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||| ||||||| Sbjct 227220 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCTCTTTGTA 227178 >seq77 Length=763242 Score = 102 bits (112), Expect = 2e-19 Identities = 107/137 (78%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 377567 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 377509 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA-TCTTGTTAAAC 224 | ||| || ||||| || || ||| | ||| | ||| ||||| | || || | Sbjct 377508 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAAGTCCAGGTAAGCCAGGTGAACC 377451 Query 225 TCTGTCGTGCTGGGGAT 241 || ||||||| ||||| Sbjct 377450 GCTTTCGTGCTTGGGAT 377434 >seq95 Length=1042479 Score = 98.7 bits (108), Expect = 2e-18 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC 176 ||||| |||||||||||| |||| |||| |||||| ||| |||||||||| | | || Sbjct 252692 ATAACCGGTCTGTGATGCGCTTAAATGTCCTGGGCTGCATGCGCGCTACAATAAAAGTAT 252633 Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236 |||| || || ||| | || |||| |||||| | | | | || || |||| Sbjct 252632 CAACCTGT--ATTTCCTAGATCGAGAGGTGCGGGTAAACCGCTGTACCACTTTCATGCTT 252575 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | | || || | || | | ||| ||||| || |||||| | | | ||| Sbjct 252574 GGGATTGTGAACTGAAACTGTT-CATATGAACTTGGAATTCCCAGTAAGTGTGAGGCATT 252516 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTG 326 | | ||| |||||||||||||||| ||||| Sbjct 252515 AACTCGCATTGATTACGTCCCTGCTCTTTG 252486 >seq143 Length=1271457 Score = 73.4 bits (80), Expect = 7e-11 Identities = 87/117 (74%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||| |||||| |||||||||||||| ||| || ||| ||| Sbjct 269108 TCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTACAATGAAAGTATCAA--AGT 269051 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || ||| | || |||| |||||| | | || | || || |||| ||||| Sbjct 269050 GTATTTCCTAGACCAAGAGGTTCGGGTAAACCGCTGAACCACTTTCATGCTTGGGAT 268994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947162812928