Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq126 140 6e-31
seq77 102 2e-19
seq95 98.7 2e-18
seq143 73.4 7e-11
>seq126
Length=623759
Score = 140 bits (154), Expect = 6e-31
Identities = 167/223 (75%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| ||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct 227396 AGATTGAG-CAATAACTGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 227338
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| | ||| | || || ||| | ||| |||| |||||| | | || |
Sbjct 227337 AATGAACGTATCAATGTGT--ATTTCCTAGACCGAGAGGTACGGGTAAACCGCTGAACCA 227280
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 227279 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 227221
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||||| | | ||| |||||||||||||||| |||||||
Sbjct 227220 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCTCTTTGTA 227178
>seq77
Length=763242
Score = 102 bits (112), Expect = 2e-19
Identities = 107/137 (78%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 377567 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 377509
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA-TCTTGTTAAAC 224
| ||| || ||||| || || ||| | ||| | ||| ||||| | || || |
Sbjct 377508 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAAGTCCAGGTAAGCCAGGTGAACC 377451
Query 225 TCTGTCGTGCTGGGGAT 241
|| ||||||| |||||
Sbjct 377450 GCTTTCGTGCTTGGGAT 377434
>seq95
Length=1042479
Score = 98.7 bits (108), Expect = 2e-18
Identities = 149/210 (71%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC 176
||||| |||||||||||| |||| |||| |||||| ||| |||||||||| | | ||
Sbjct 252692 ATAACCGGTCTGTGATGCGCTTAAATGTCCTGGGCTGCATGCGCGCTACAATAAAAGTAT 252633
Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236
|||| || || ||| | || |||| |||||| | | | | || || ||||
Sbjct 252632 CAACCTGT--ATTTCCTAGATCGAGAGGTGCGGGTAAACCGCTGTACCACTTTCATGCTT 252575
Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296
||||| | | | || || | || | | ||| ||||| || |||||| | | | |||
Sbjct 252574 GGGATTGTGAACTGAAACTGTT-CATATGAACTTGGAATTCCCAGTAAGTGTGAGGCATT 252516
Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTG 326
| | ||| |||||||||||||||| |||||
Sbjct 252515 AACTCGCATTGATTACGTCCCTGCTCTTTG 252486
>seq143
Length=1271457
Score = 73.4 bits (80), Expect = 7e-11
Identities = 87/117 (74%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
|||||||||||||||||||| |||||| |||||||||||||| ||| || ||| |||
Sbjct 269108 TCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTACAATGAAAGTATCAA--AGT 269051
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241
|| ||| | || |||| |||||| | | || | || || |||| |||||
Sbjct 269050 GTATTTCCTAGACCAAGAGGTTCGGGTAAACCGCTGAACCACTTTCATGCTTGGGAT 268994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947162812928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |