Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq833 340 6e-91 seq245 165 3e-38 seq198 165 3e-38 seq221 149 2e-33 seq196 140 1e-30 seq150 104 8e-20 seq687 84.2 7e-14 >seq833 Length=273397 Score = 340 bits (376), Expect = 6e-91 Identities = 298/373 (80%), Gaps = 31/373 (8%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---------CCGAAACGGC- 237 ||||||| ||||| || || |||||| ||||||| | || |||||| | Sbjct 51159 TAAGTAAGAAAACAATTAGAGTAGTGTTATTTCATTGGCTATAATGAACCCGAAAGAACA 51218 Query 238 -----TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 ||||||||||||||||||||| | ||| | ||| | | |||||||||||||| Sbjct 51219 ATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGAGTCAAGC 51278 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||| |||| |||| || ||||||||||||| |||||||||| Sbjct 51279 TCAACAGGGTCTTCTTTCCTCGCT-ATTCA---AACCCCGTTCCCTTGGATGTGGTTTCG 51334 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||| Sbjct 51335 CTAGATAGTAGGTAGGGACAGAAAGAATGTCGATAATCCATTCATGCGCGTCACTAATTA 51394 Query 413 GATGACGAGGCATTTGGCT------------ACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||||||||||||||||| | |||| ||||||||||||| |||| Sbjct 51395 GATGACGAGGCATTTGGCTAAAAAAAAAAGAAAAAAAAGAAAGTCATAGTTACTTTCGCC 51454 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || Sbjct 51455 GTTTACCCGCGCTTACTTGAATTTCATCACTTTGACATTCAGAGCACTGGGCAGAAAGCA 51514 Query 521 CATTGCGTCAACA 533 ||||| | ||||| Sbjct 51515 CATTGTGGCAACA 51527 >seq245 Length=381971 Score = 165 bits (182), Expect = 3e-38 Identities = 96/99 (97%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 104571 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTG 104630 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||| Sbjct 104631 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 104669 >seq198 Length=746232 Score = 165 bits (182), Expect = 3e-38 Identities = 100/106 (94%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 |||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 122084 AGCCCGTTCCTTTGGCTGTGGTTTCGTTAGATAGTAGATAGGGACAGAAAGAATCTCGTT 122143 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122144 GATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 122189 >seq221 Length=770244 Score = 149 bits (164), Expect = 2e-33 Identities = 90/95 (95%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| Sbjct 2248 GAGAGTCATAGTTACTCCCGCCTTTTACCCGCGCTTACTTGAATGTCTTCACTTTGACAT 2307 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||| ||||||| Sbjct 2308 TCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 2342 >seq196 Length=745412 Score = 140 bits (154), Expect = 1e-30 Identities = 148/197 (75%), Gaps = 15/197 (8%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-- 229 ||||| ||| || | || |||| | || ||||| |||||||||||||| | ||| Sbjct 109554 GTTCCACTTAATCAAGTATGTAAGGAGACAATAAGAGTAGTGGTATTTCATTGGCGATAA 109495 Query 230 -GAAACGG------------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 ||| | | |||||||||||||||||| ||| | ||| | ||| | Sbjct 109494 TGAACCTGAAAGAACAATATCTCCCACTTATTCTACACTTCTTATGTCTCCTTACACTGC 109435 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | || ||||||||||||||||||||||||||||||||||| ||| | ||||||||||| Sbjct 109434 CAGATTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTTTTCAAAGCCCGTTCC 109375 Query 337 CTTGGCTGTGGTTTCGC 353 ||||||||||||||||| Sbjct 109374 CTTGGCTGTGGTTTCGC 109358 >seq150 Length=757641 Score = 104 bits (114), Expect = 8e-20 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||||| ||||||||| |||||||| | ||| |||||||||||| |||||| |||| Sbjct 611493 AGTCACAGTTACTCCTTCCGTTTACTGAC-CTTACTTGAATTTCTTCGTTTTGACGTTCA 611435 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||| |||||||| ||||||||| Sbjct 611434 GAGCACTGGGCAGAATTCACATTGTGTCAACATC 611401 >seq687 Length=169304 Score = 84.2 bits (92), Expect = 7e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||||||| |||||||| ||||||||||| ||||| ||||||| ||||||||||| ||| Sbjct 107314 GCCGTTTTCCCGCGCTCACTTGAATTTCTTTACTTTTACATTCAAAGCACTGGGCAAAAA 107255 Query 518 TCACATTGCGTCAA 531 ||||| | ||||| Sbjct 107254 GCACATAGTGTCAA 107241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635135802048