Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq833 340 6e-91
seq245 165 3e-38
seq198 165 3e-38
seq221 149 2e-33
seq196 140 1e-30
seq150 104 8e-20
seq687 84.2 7e-14
>seq833
Length=273397
Score = 340 bits (376), Expect = 6e-91
Identities = 298/373 (80%), Gaps = 31/373 (8%)
Strand=Plus/Plus
Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---------CCGAAACGGC- 237
||||||| ||||| || || |||||| ||||||| | || |||||| |
Sbjct 51159 TAAGTAAGAAAACAATTAGAGTAGTGTTATTTCATTGGCTATAATGAACCCGAAAGAACA 51218
Query 238 -----TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292
||||||||||||||||||||| | ||| | ||| | | ||||||||||||||
Sbjct 51219 ATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGAGTCAAGC 51278
Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352
||||||||||||||||||| |||| |||| || ||||||||||||| ||||||||||
Sbjct 51279 TCAACAGGGTCTTCTTTCCTCGCT-ATTCA---AACCCCGTTCCCTTGGATGTGGTTTCG 51334
Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412
||||||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 51335 CTAGATAGTAGGTAGGGACAGAAAGAATGTCGATAATCCATTCATGCGCGTCACTAATTA 51394
Query 413 GATGACGAGGCATTTGGCT------------ACCTTAAGAGAGTCATAGTTACTCCCGCC 460
||||||||||||||||||| | |||| ||||||||||||| ||||
Sbjct 51395 GATGACGAGGCATTTGGCTAAAAAAAAAAGAAAAAAAAGAAAGTCATAGTTACTTTCGCC 51454
Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 51455 GTTTACCCGCGCTTACTTGAATTTCATCACTTTGACATTCAGAGCACTGGGCAGAAAGCA 51514
Query 521 CATTGCGTCAACA 533
||||| | |||||
Sbjct 51515 CATTGTGGCAACA 51527
>seq245
Length=381971
Score = 165 bits (182), Expect = 3e-38
Identities = 96/99 (97%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 104571 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTG 104630
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||
Sbjct 104631 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 104669
>seq198
Length=746232
Score = 165 bits (182), Expect = 3e-38
Identities = 100/106 (94%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386
|||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 122084 AGCCCGTTCCTTTGGCTGTGGTTTCGTTAGATAGTAGATAGGGACAGAAAGAATCTCGTT 122143
Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122144 GATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 122189
>seq221
Length=770244
Score = 149 bits (164), Expect = 2e-33
Identities = 90/95 (95%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
|||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 2248 GAGAGTCATAGTTACTCCCGCCTTTTACCCGCGCTTACTTGAATGTCTTCACTTTGACAT 2307
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||| |||||||
Sbjct 2308 TCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 2342
>seq196
Length=745412
Score = 140 bits (154), Expect = 1e-30
Identities = 148/197 (75%), Gaps = 15/197 (8%)
Strand=Plus/Minus
Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-- 229
||||| ||| || | || |||| | || ||||| |||||||||||||| | |||
Sbjct 109554 GTTCCACTTAATCAAGTATGTAAGGAGACAATAAGAGTAGTGGTATTTCATTGGCGATAA 109495
Query 230 -GAAACGG------------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276
||| | | |||||||||||||||||| ||| | ||| | ||| |
Sbjct 109494 TGAACCTGAAAGAACAATATCTCCCACTTATTCTACACTTCTTATGTCTCCTTACACTGC 109435
Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336
| || ||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 109434 CAGATTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTTTTCAAAGCCCGTTCC 109375
Query 337 CTTGGCTGTGGTTTCGC 353
|||||||||||||||||
Sbjct 109374 CTTGGCTGTGGTTTCGC 109358
>seq150
Length=757641
Score = 104 bits (114), Expect = 8e-20
Identities = 80/94 (85%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501
||||| ||||||||| |||||||| | ||| |||||||||||| |||||| ||||
Sbjct 611493 AGTCACAGTTACTCCTTCCGTTTACTGAC-CTTACTTGAATTTCTTCGTTTTGACGTTCA 611435
Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||| |||||||| |||||||||
Sbjct 611434 GAGCACTGGGCAGAATTCACATTGTGTCAACATC 611401
>seq687
Length=169304
Score = 84.2 bits (92), Expect = 7e-14
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
||||||| |||||||| ||||||||||| ||||| ||||||| ||||||||||| |||
Sbjct 107314 GCCGTTTTCCCGCGCTCACTTGAATTTCTTTACTTTTACATTCAAAGCACTGGGCAAAAA 107255
Query 518 TCACATTGCGTCAA 531
||||| | |||||
Sbjct 107254 GCACATAGTGTCAA 107241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635135802048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |