Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq985 289 9e-76 seq689 255 2e-65 seq45 105 2e-20 seq183 78.8 3e-12 >seq985 Length=80180 Score = 289 bits (320), Expect = 9e-76 Identities = 301/389 (77%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAA---GAGCCCTGTATCAGTATTTATTGTCACTA 57 ||||||||| |||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 61240 GTACTCATTTCAATTACAGGGCCTCATATATGAGTCCTGTATTGTTATTTTTCGTCACTA 61299 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 61300 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 61359 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 61360 GTTTCTCAGACTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACTATG 61419 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||| ||| |||||||||||||| || ||||||| || | | | || Sbjct 61420 GTAGTCCTAAATACTACAATCAAAAGTTGATAGGGCGGACATTTGAAAGATCTGTTGTCG 61479 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACCAAGGA----GCCCCGAAGG 292 | | || |||| ||| || ||||||| || ||| | || | || |||| Sbjct 61480 GTACGAGACCATACGA-TCTGCAAGTTATCTAGAGTTCAACCAGTATACGACCAAAAAGG 61538 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA--GCATGT 349 || | | |||| |||||||| ||| | |||| ||| | |||| || |||||| Sbjct 61539 TCGCTTGGTTTTACCCTAATAAAAGCACACGTTCCATTGGTCCGTGTTTATATTGCATGT 61598 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCA 378 |||||||||||||||||||| |||| ||| Sbjct 61599 ATTAGCTCTAGAATTACCACAGTTACCCA 61627 >seq689 Length=105261 Score = 255 bits (282), Expect = 2e-65 Identities = 360/503 (72%), Gaps = 52/503 (10%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC---CAAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || || | ||| |||||| |||| | ||||||| Sbjct 84576 GTACTCATTCCAATTACAGGGCCTCGCATATGAGTACTGTATTGTAATTTTTCGTCACTA 84635 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 84636 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 84695 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||| || |||||||||||| Sbjct 84696 ATTTCTCAGGCTACC-------------------------CGTTACCCGTTG-------- 84722 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || || ||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 84723 GTAGTCCTAAATACTGCCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 84782 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA---CCA---AGGAGCCCCGAAG 291 | |||| ||| |||| | ||||| | || | | ||| | || | ||| Sbjct 84783 GTACAAGATCATACGATCTGC-AAGTTGTCTAGAGTTAAACCCATATACGATCAAA-AAG 84840 Query 292 GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG-TCGGGGTTTTTA--GCATG 348 | || | | |||| |||||||| ||| | |||| | || |||| || | || Sbjct 84841 GTCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCATTGGTCCATGTTTATATTGAATA 84900 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406 ||||||||||||||||||||| |||||||| ||| | || || ||| || ||| || Sbjct 84901 TATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 84958 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||| ||||||||| || ||||||||||| | || | | | |||||||||||||| Sbjct 84959 AACTGATATAATGAGCCTTTTGCAGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCA 85017 Query 467 TGGCTTAATCTTTGAGACAAGCA 489 ||||||||||||||||||||||| Sbjct 85018 TGGCTTAATCTTTGAGACAAGCA 85040 >seq45 Length=1204584 Score = 105 bits (116), Expect = 2e-20 Identities = 331/512 (65%), Gaps = 58/512 (11%) Strand=Plus/Plus Query 7 ATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| | || | | ||| | || || ||||| ||||||| ||| | Sbjct 1176100 ATTCCAATTACAGGGCCTCGTATATGAGGCGTGCATTGTTATTTTCCGTCACTATCTCAC 1176159 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 || | |||| ||||||| || || | ||||||||||||| ||||| |||||| ||||| Sbjct 1176160 CGAGGTGGGAGTGGGTAAGTTACGGTCGTGCTGCCTTCCTTAGATGTCGTAGCCTTTTCT 1176219 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 | ||||||| |||| ||| ||| | Sbjct 1176220 TTG----------CGGAATCTAACC--------------------------ATGATAGTC 1176243 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 | || ||| |||| || || ||||||||| || |||| || | | || ||| ||| Sbjct 1176244 CTAAATGCTATCATCAGAAATTATTAGGGCAGACATATGAAAGACCAACCGTTGGCACAA 1176303 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAATC--ACCAAGGAGCCCCGAAGGGCGTTGGTT 301 | || | |||| | || ||||| ||||| | ||| | | || || | | | Sbjct 1176304 GACCGTACGATCTGCAAA-TTATTTTGAATTTAATCAACAAA-----ATGGTCGCTTGGT 1176357 Query 302 TTTTATCTAATAAAT--ACACCCCTTCCGAAG--TCGGGGTTTT-TAGCATGTATTAGCT 356 | | |||||||| |||| | ||| | ||| | || | | |||| |||||||| Sbjct 1176358 TATAGCCTAATAAAAGCACACACGTTCAATTGCTTCGTGTTTATATTGCATATATTAGCT 1176417 Query 357 CTAGAATTACCACGGTT----ATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||||| || || ||| ||||| ||||| || ||| || ||| ||||||| Sbjct 1176418 CTAGACACAC-ACAGTTCCACATCCAAGTAGTTGTTAACGATCTAAGGAACCGTAACTGA 1176476 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 | |||||| | || || || ||||| | || | | ||| | ||| || ||||||||| Sbjct 1176477 TATAATGAACTTTTTGCGGTGTCACTTT-TAATTCGTGTATGCATAGCCAAGCATGGCTT 1176535 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| | ||| |||||| Sbjct 1176536 GATCTTTGAGACAAGCATACGGCTATTGGCAG 1176567 >seq183 Length=591511 Score = 78.8 bits (86), Expect = 3e-12 Identities = 108/149 (72%), Gaps = 14/149 (9%) Strand=Plus/Minus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || || || | || ||||||||||| ||||||||||||||||| || ||| | Sbjct 367651 TAACTTATGCTCCAGGTGTCTTCCTTGGATATGGTAGCCGTTTCTCAGACTTTTGCTCTG 367592 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 |||||||| | | | | | ||| ||||||| | || ||| | ||||||| Sbjct 367591 GAATCGAAACTTGA-TACTCGTCCCCCGTTG---CAAT-------CACAA---TACCATC 367546 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||||||||||| | ||||||||||| || Sbjct 367545 AAAAGTTGATAGCGTAGAAATTTGAAAGA 367517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510340701696