Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_010356.1 Length=190032 Score E Sequences producing significant alignments: (Bits) Value seq357 439 3e-118 seq376 268 1e-66 seq521 174 2e-38 seq587 114 2e-20 seq1658 96.9 4e-15 seq335 96.9 4e-15 >seq357 Length=451761 Score = 439 bits (486), Expect = 3e-118 Identities = 511/688 (74%), Gaps = 30/688 (4%) Strand=Plus/Minus Query 2088 TTAGGAGGAAAATTTTCTAATAATTAAATCTAAATATTCATAAATATCTTTGTTTGTTAA 2147 ||| || ||| | || |||||| | ||||||||||||||||| |||||||||||||| Sbjct 56067 TTATGATGAAGTTCTTTTAATAAGTGTATCTAAATATTCATAAACGTCTTTGTTTGTTAA 56008 Query 2148 TTTATTTGGAATCTGTTTTGATTCTAGAATATTTTCCCTTGCATGCCATATGAATAGATT 2207 |||||||||||| || || ||| | |||||||| || || || ||||| | |||| ||| Sbjct 56007 TTTATTTGGAATTTGGTTCGATACGAGAATATTATCTCTGGCGTGCCACGTAAATAAATT 55948 Query 2208 GGAATAGGATGATTGAAGGAATTCGCCATAGTTAATTCCCGACCGTAGTCCAATATATTG 2267 || | | | ||| | ||||| ||||| |||||||| || | | || |||||||| Sbjct 55947 AGAGCAAGTAGCTTGTAAAAATTCTCCATAATTAATTCCAGATCTCAAGCCGATATATTG 55888 Query 2268 ATGGACCATTATGATATTTTCGCCAAATCtttttttCAAGTGTTTTTCAGCCGTTGTCAA 2327 ||| ||||| ||||| ||||||||||| | |||||||| ||||||||| |||| || | Sbjct 55887 ATGCACCATAATGATGTTTTCGCCAAAGCGCTTTTTCAAATGTTTTTCACCCGTAGTAAG 55828 Query 2328 ACTACAATTCTTCCTTCGTATAAGTGCCCAGGATGTCTCGCTAACTCTATAAAGGCGCAA 2387 ||||||||| || || ||||| | |||||| || ||||| | | | ||| ||||| | Sbjct 55827 ACTACAATTTTTTCTACGTATCAATGCCCATGAGTTCTCGTTTATTTGATATAGGCGAAG 55768 Query 2388 TACCAATTGGTAATTTCCATAAACCGTACTCTGTTGATCATACTCGTTGAAAAATTTTCT 2447 |||| ||| | ||| ||||| || ||||||||||||||||| |||||||| |||||||| Sbjct 55767 TACCGTTTGATGATTGCCATAGACGGTACTCTGTTGATCATATTCGTTGAAGAATTTTCT 55708 Query 2448 ATACGGTAATATTGAATTTCTATGGGTTGATGCCTCTTCCGATTTGGCATT----TAAC- 2502 ||||||||||| ||||| | || |||| || | || | ||| ||||| |||| Sbjct 55707 GTACGGTAATATAGAATTGCGGTGTGTTGTTGGATTCTCTGTTTTTGCATTTTCGTAACT 55648 Query 2503 ----AATTTCGTTTCCTTGTAATATTCGATAAaatttttatatctattttttaaatcgtt 2558 | || |||||| || ||| |||| ||||| | ||||||| | || | | |||||| Sbjct 55647 TATAAGTTGCGTTTCTTTATAAGATTCTATAAATTGTTTATATTTTATTCTCAGATCGTT 55588 Query 2559 tatgcgttctttacgaattttatttaatttttGCTGTGATTGGGATGATGACGACATTAG 2618 ||||||||||| ||||||||||||| | | ||| || || || Sbjct 55587 CATGCGTTCTTTGCGAATTTTATTTA--------TATCATT---AT-TTG-------TAC 55547 Query 2619 TGATTCAAAATGACATTTAGCAATTAATTCTAACCCTCTTGTGTAATATCTATTAATGTT 2678 | |||| || | |||| | |||| ||| | | | ||| ||||||| ||||||| | Sbjct 55546 T--TTCATAACCAAATTTTACTATTATTTCCAGGGCACGTGTATAATATCGATTAATGCT 55489 Query 2679 TCTAAAATATTTATTCATTCTAGTTGATAGGGAATTGAATATAAACATTGTCTCTTCCGC 2738 ||||||||| || |||||||| ||||| || ||||| |||||||||||| ||||| || Sbjct 55488 TCTAAAATACTTCTTCATTCTTGTTGAGAGAGAATTAAATATAAACATTACTTCTTCAGC 55429 Query 2739 CGTCACAGTTAGGAGATTTTTCTGTTGT 2766 || || |||| | ||||||| ||||| Sbjct 55428 GGTTACGATTAGTAAATTTTTCCGTTGT 55401 Score = 293 bits (324), Expect = 3e-74 Identities = 441/617 (71%), Gaps = 31/617 (5%) Strand=Plus/Minus Query 2866 GCCGGTTCAAAATTACTCAATATACCCATGATAGATTTAATGCCCACGCTGTAACGGCCA 2925 || ||||| |||||| | ||| ||| | || || || |||||||| ||||| || ||| Sbjct 55295 GCTGGTTCGAAATTAGCTAGTATTCCCTTTATTGACTTGATGCCCACACTGTAGCGCCCA 55236 Query 2926 TCGTATCCAAAATAAATGAGTAATTCTTCGGTAATCTCAATCGGGGTATGTGGTTCTTTC 2985 || ||||| ||||| || | ||||| ||| | || || || || | | |||||||||| Sbjct 55235 TCATATCCGAAATACATCAACAATTCCTCGTTTATTTCGATGGGTGCGTTTGGTTCTTTC 55176 Query 2986 AAACAAGTAAAACAAATGTCCCAGTAAATTTTATTCAGCTTGTCTGTATTTGGAGACATT 3045 | || ||||| |||| | |||||| |||||||||| |||| || |||||||||||| Sbjct 55175 AGGCATGTAAAGCAAAGATTCCAGTAGATTTTATTCAATCTGTCAGTGTTTGGAGACATT 55116 Query 3046 CCCAGCGATTCGAAAAATTCTTCCA-TTTATCCGCTTG-TCAGTTATAGTTA--TTATAG 3101 |||| |||| ||||| | ||||| ||||||||| | |||||||| ||| | || Sbjct 55115 CCCAATGATTTAAAAAACTGTTCCATTTTATCCGCACGTTCAGTTAT--TTAGCTACTAA 55058 Query 3102 TTGAAAAACACGACTGAATGCCCAGCGACTACTTGTTGAGTGATTGACTACAAACGAATA 3161 || | ||||||||||| || | | | ||| || | ||||| | | | | | | Sbjct 55057 TTAGAGAACACGACTGATTGACTTGTG-TTAC---TTTATTGATTTGCGGCGACAGCAAA 55002 Query 3162 CGCAAATGTCTCGCGACTGCTGCTATATGAAA--GTTATTAACGATAAGAACAACGAGTA 3219 | ||||||| | ||||||||||||||| | ||||||||||||||| Sbjct 55001 TG---ATGTCTCATGCTTGCTGCTATATGAAAATGCATTTAACGATAAGAACA------- 54952 Query 3220 CATTACGAGTGAGTTTATTGAGTGATTTCAAGAGCGTTTTTTACAATTATATGATATTTG 3279 || ||||| |||||| |||||||| ||| | |||||||||| ||| || ||||| Sbjct 54951 ---TATGAGTGCATTTATTAAGTGATTTTGAGAACATTTTTTACAACTATTTGGTATTTA 54895 Query 3280 CTTCCAGCTGAGATTTTAAAACGAAT-ATATTTAGTTTCTGTCAAGTGTGA----GGGTA 3334 ||| ||||||||||||| |||||||| |||||| |||| | | || || | Sbjct 54894 CTTTCAGCTGAGATTTTTAAACGAATAATATTTTATTTCAACTATATTCGACATTCGGCA 54835 Query 3335 ACTTGTAACCTTTTTTAAATGTGTTATTTAAAATGTCTTTAGGTATTTTAATGATCGTTT 3394 |||| ||||||| |||||| || |||||||| |||| |||| || ||| | ||| Sbjct 54834 CAATGTAGCCTTTTTCAAATGTATTGCTTAAAATGCCTTTGGGTAGCTTTATGTTATTTT 54775 Query 3395 GCACACGTATTCCCATATCATTGCTAATGCT-ACACTCGTTTGTATTTTTATTTAATAAC 3453 |||||||||| | |||||| |||||||| | ||||| || |||| ||||| Sbjct 54774 TAGCACGTATTCCAAAATCATTACTAATGCTAATACTCGCGAGTTTTTTCGTTTAAGGGA 54715 Query 3454 ATCATATATGAAATATT 3470 | | |||||||||||| Sbjct 54714 AATAAATATGAAATATT 54698 Score = 219 bits (242), Expect = 5e-52 Identities = 301/415 (73%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 3662 TTGTTTTCTTTTCCACAAAACTTCCTACAGCTTTGTTATAATATGGAAACACACAAACTT 3721 || ||||| |||| || |||||||||| |||||||||||||| ||| || | || | Sbjct 54688 TTTTTTTCATTTCGACGGTACTTCCTACACTTTTGTTATAATATGAAAAAACGCCCACGT 54629 Query 3722 TATCTTTATATAATATCCCCCCATTATCCTCATCTAATGCTCTCTCCATAATACCCAAAT 3781 | || || || ||||| | | | || | ||| | |||||||| | | || Sbjct 54628 TGTCATTGTACAATATGACTTCGTGATTC------AATTTTTAGTCCATAATGTCTACAT 54575 Query 3782 ACATTGATATGGCGTATGGATGTTGCGCTAATTGTG--AAATGTCTGGCTTAATTTTATA 3839 |||||| || || ||||| ||||| | || |||| |||| || ||||| |||| ||| Sbjct 54574 ACATTGCGATTGCATATGGGTGTTGTGATATATGTGCGAAATATCGGGCTTCATTTGATA 54515 Query 3840 ATAAAAATGAATACCGCCTG-TCGAAGTTAAAAGACCAATTTCCTTAACGTCAAAAA-CA 3897 |||||||| | ||| || ||||||| |||||| |||| || || || ||| | || Sbjct 54514 ATAAAAATTTAAACCCGTTGGTCGAAGTCAAAAGATCAATCTCTTTGACAGAAAATATCA 54455 Query 3898 AAACCTTGTATAACAATAGTGTATGAATTTAAAAAACTAATGCATTCGTCTTCCAATAA- 3956 ||| |||||||||||| ||||||| ||||||||| | ||| ||||| || |||||||| Sbjct 54454 AAATCTTGTATAACAAAGGTGTATGTATTTAAAAATCCAATACATTCATCCTCCAATAAG 54395 Query 3957 -ACAT-ATAATACATTCTCCTTTTTGTGGTAAAAAGGTTTCGGTCGTTGTCGTTGTCGAT 4014 |||| |||||||| || | | ||||||||| | |||||||||| || |||||| Sbjct 54394 CACATAATAATACACTCAGCAAAGTCTGGTAAAAATATCTCGGTCGTTGAAGTGGTCGAT 54335 Query 4015 CGTAAATCAAGAATTGTATAATTAAAACTATGAACACCCGGATAATATGGTACCA 4069 ||||||||||| || || ||| || |||||||| | ||| | || |||| Sbjct 54334 TTCAAATCAAGAATATTAAGATCAAAGCTGTGAACACCGGCATAGAAAGGAACCA 54280 >seq376 Length=224662 Score = 268 bits (296), Expect = 1e-66 Identities = 472/683 (69%), Gaps = 35/683 (5%) Strand=Plus/Plus Query 2097 AAATTTTCTAATAATTAAATCTAAATATTCATAAATATCTTTGTTTGTTAATTTATTTGG 2156 ||||||| |||| || ||||||||||||||| | |||||| | |||| |||||| Sbjct 110651 AAATTTTTTAATTATAGTATCTAAATATTCATATAAATCTTTACTAGTTATTTTATT--- 110707 Query 2157 AATCTGTTTTGATTCTAGAATATTTTCCCTTGCATGCCATATGAATAGATTGGAATAGGA 2216 | | || || | |||| ||||||||| || | ||||||||| |||| | ||| || || Sbjct 110708 ATTTTGCTTACACTCTAAAATATTTTCTCTAGGATGCCATATAAATAAACTGGGATGGGT 110767 Query 2217 TGATTGAAGGAATTCGCCATAGTTAATTCCCGACCGTAGTCCAATATATTGATGGACCAT 2276 ||| || ||||| ||||| || ||| ||| ||| |||||| |||||||||||||| Sbjct 110768 AATTTGTAGAAATTCTCCATAATTGATTGCCGTTTGTATTCCAATGTATTGATGGACCAT 110827 Query 2277 TATGATATTTTCGCCAAATCtttttttCAAGTGTTTTTCAGCCGTTGTCAAACTACAATT 2336 || | | ||||||||| | ||||||||| ||||| ||||| || || | ||||||||| Sbjct 110828 TACAACTTGTTCGCCAAAACGTTTTTTCAAATGTTTCTCAGCTGTAGTTAGACTACAATT 110887 Query 2337 CTTCCTTCGTATAAGTGCCCA-GGATGTCTCGCTA-ACTCTATAAAGGCGCAATACCAAT 2394 || || | || | ||||| | || | || || || |||||| || | |||||| Sbjct 110888 TTTTCTACAAATTAACGCCCATGAATTTTCCGATACACAATATAAA--CGAAGTACCAAC 110945 Query 2395 TGGTAATTTCCATAAACCGTACTCTGTTGATCATACTCGTTGAAAAATTTTCTATACGGT 2454 || | |||||||| || || || || | ||| || || ||||||||||||||||| ||| Sbjct 110946 TGATTGTTTCCATACACTGTGCTTTGATTATCGTATTCATTGAAAAATTTTCTATATGGT 111005 Query 2455 AATATTGAATTTCTATGGGTTGATG------CCTCTTCCG-ATTTGGCAT--TTA----- 2500 || |||||| ||||||| || | || ||| | | | || || | ||| Sbjct 111006 AAAATTGAAGTTCTATGAGTAGTTGGACTCTCCTTTGCAGTCGTTTGCTTGATTATTATT 111065 Query 2501 --------ACAATTTCGTTTCCTTGTAATATTCGATAAaatttttatatctattttttaa 2552 || | ||| | || |||||||| ||||| ||||||||| | || |||| Sbjct 111066 CAGTACGTTCAGTAGCGTCTTTTTATAATATTCAATAAAGTTTTTATATTTTGTTCTTAA 111125 Query 2553 atcgtttatgcgttctttacgaattttat-ttaatttttGCTGTGATTGGGATGATGACG 2611 ||| || || | | || ||| || | | || | | ||||| | | Sbjct 111126 ATCATTCATTTGCTTTTCACGTGCCAAATCGTGAGATTCGTTAAAATTGGTACTCGTAAA 111185 Query 2612 ACATTAGTGATT-----CAAAATGACATTTAGCAATTAATTCTAACCCTCTTGTGTAATA 2666 | | || ||||| | | | |||| ||||||||||||| | || || ||||| Sbjct 111186 AGAATATTGATTATCAGCGTATCCATATTTCACAATTAATTCTAATGCCCTCGTATAATA 111245 Query 2667 TCTATTAATGTTTCTAAAATATTTATTCATTCTAGTTGATAGGGAATTGAATATAAACAT 2726 |||||| | || |||||||||||||||| || ||||| || ||||| | ||||||||| Sbjct 111246 TCTATTTAGAATTTTAAAATATTTATTCATCCTGGTTGAAAGTGAATTAATTATAAACAT 111305 Query 2727 TGTCTCTTCCGCCGTCACAGTTA 2749 || || || || ||||||| Sbjct 111306 CACTTCGTCGGCTGTGACAGTTA 111328 Score = 161 bits (178), Expect = 1e-34 Identities = 243/343 (71%), Gaps = 17/343 (5%) Strand=Plus/Plus Query 3767 CCATAATACCCAAATACATTGATATGGCGTATGGATGTTGCGCTAATTGTGAAATGTCTG 3826 |||| || |||||||||||||| || | |||||| ||||| | ||| ||||| | || Sbjct 116749 CCATTATTCCCAAATACATTGAAATCGTATATGGAGTTTGCGAAAGTTGCGAAATATTTG 116808 Query 3827 GCTTAATTTTATAATAAAAATGAATACCGCCTGTCGAAGTTAAAAGACCAATTTCCTTAA 3886 ||||||| |||||| | |||||||| | | | || |||||||| ||||||| | | Sbjct 116809 GCTTAATATTATAACAGAAATGAATTCGGTCAGTTAGTGTTAAAAGTTCAATTTCTTGTA 116868 Query 3887 CGTCAAAAACAAAACCTTGTATAACAATAGTGTATGAATTTAAAAAACTAATGCATTCGT 3946 | ||| | | ||||||||||| || || ||||| | || || | || Sbjct 116869 CCGAAAATATATAACCTTGTATA-----------TG--TTGAAAAATCCTATACACTTGT 116915 Query 3947 CTTCCAATAAACATATAATACAT--TCTCCTTTTTGTGGTAAAAAGGTTTCGGTCGTTGT 4004 | |||| ||| | | ||| ||||| || |||||||| ||||| ||| Sbjct 116916 TATTTAATACCCATGCA-TGCATACTCTCCCTTCGCAGGTAAAAATGTTTCCCCATTTGA 116974 Query 4005 CGTTGTCGATCGTAAATCAAGAATTGTATAATTAAAACTAT-GAACACCCGGATAATATG 4063 ||||||||||| ||||||| ||| | || |||||| ||| |||| || |||| || Sbjct 116975 TGTTGTCGATCGCAAATCAAAAATATTGTACTTAAAAGTATAGAACTCCGATATAAAATC 117034 Query 4064 GTACCAATTCTCGAAATAATGTGGTATGAGTATCTTCAAATTG 4106 | ||||||||| |||||||||| |||||||| |||| |||||| Sbjct 117035 GAACCAATTCTTGAAATAATGTTGTATGAGTTTCTTTAAATTG 117077 Score = 143 bits (158), Expect = 3e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 2866 GCCGGTTCAAAATTACTCAATATACCCATGATAGATTTAATGCCCACGCTGTAACGGCCA 2925 || ||||| ||||| | ||||| ||||| || ||||| | || || ||||| || Sbjct 111502 GCTGGTTCGTAATTATTTAATATTCCCATTATTGATTTTGTACCAACACTGTATTTACCG 111561 Query 2926 TCGTATCCAAAATAAATGAGTAATTCTTCGGTAATCTCAATCGGGGTATGTGGTTCTTTC 2985 || || | |||||||||||| ||||| ||| |||| ||||| || |||| ||| | ||| Sbjct 111562 TCATAGCGAAAATAAATGAGCAATTCCTCGTTAATTTCAATTGGTGTATTTGGATTTTTT 111621 Query 2986 AAACAAGTAAAACAAATGTCCCAGTAAATTTTATTCAGCTTGTCTGTATTTGGAGACATT 3045 ||| ||| ||||||||| ||| |||| |||||||| || ||||| | ||| |||||| Sbjct 111622 AAATAAGCAAAACAAATCTCCTAGTATATTTTATTAAGTTTGTCACCCTCTGGGGACATT 111681 Query 3046 CCCAGCGATTCGAA 3059 || |||||||| || Sbjct 111682 CCTAGCGATTCCAA 111695 Score = 102 bits (112), Expect = 1e-16 Identities = 140/194 (72%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 3250 AGAGCGTTTTTTACAATTATATGATATTTGCTTCCAGCTGAGATTTTAAAACGAATATAT 3309 ||||||||||| | || || |||| ||||| |||||||||||||| ||||||| || | Sbjct 116255 AGAGCGTTTTTAATAAAAATTTGATCTTTGCCTCCAGCTGAGATTTGAAAACGATAATTT 116314 Query 3310 TTAGTTTCTGTCAAGTGTGAGGGTAACTTGTAACCTTTTTTAAATGTGTTATTTAAAATG 3369 ||||| || | || | | ||| || ||| ||| |||| || || | | || Sbjct 116315 TTAGTCTCCACAATGTTTTTAGATAATTTATAATGTTTCTTAACGGTCTTGTCTCTTATA 116374 Query 3370 TCTTTAGGTATTTTAA----TGATCGTTTGCACACGTATTCCCATATCATTGCTAATGCT 3425 ||||| | |||||||| | | ||||||||||| | || ||||||| |||||| Sbjct 116375 TCTTT-GATATTTTAACGTTTATTTGTTTGCACACGCACACCTTTATCATTCCTAATGAC 116433 Query 3426 ACACTCGTTTGTAT 3439 |||||| ||||||| Sbjct 116434 ACACTCATTTGTAT 116447 >seq521 Length=200959 Score = 174 bits (192), Expect = 2e-38 Identities = 571/904 (63%), Gaps = 17/904 (2%) Strand=Plus/Plus Query 70156 ATAAGATGAATTATACCGTTAATTTGGATAACGTTAATTTTAAAAATTTATTTGCACTAA 70215 |||||||||||||||| || ||| |||||||||| | |||| |||||||| | | | Sbjct 186222 ATAAGATGAATTATACGGTGAATCTGGATAACGTAAGCTTTACGAATTTATTCTCGTTGA 186281 Query 70216 GTTGTGtaaataatacatggaaaaaactcgttgaaaattatataaataaaaagaaaaaaT 70275 ||||||||||| |||| ||||| || | || |||| || || || || ||| |||| | Sbjct 186282 GTTGTGTAAATGATACGTGGAAGGAAATTGTACAAAAATACATTAACAAGAAGCAAAAGT 186341 Query 70276 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGCTTATTACCATTTG 70335 | || |||| || |||||||| Sbjct 186342 TTATTTTACAAAAAAAGTTAAATTATAGGAAAAATAAAATAAATCGATTTACACCATTTG 186401 Query 70336 AATACATGTTAACTGGTTATAATTGTTTTAAAAAATGTCAAAACTTGCATCTACAATACA 70395 |||| ||| | || || ||||| || ||||| ||||||||||| ||||| | ||||| Sbjct 186402 AATATATGCTGACCGGGTATAAATGCTTTAAGAAATGTCAAAATATGCATTTGGAATACG 186461 Query 70396 ATTATGAACAAATGAAATATTTGGTAGATTTTAATTTTCGTTTAATTTTGATACGGCCAG 70455 | ||| ||||| ||||| || || || ||||| | | || | | ||||| | Sbjct 186462 ACTATCTTCAAATCAAATACCTGCTAACATTCAATTTCCAAATGATACTCAACCGGCCGG 186521 Query 70456 ATTTTGTCGTTAATATGTGTGACGTTGAATATCCAAATTGGTTAGATATTTTTATTAATT 70515 | ||| || |||||| |||| ||||| ||||| ||||| ||||||| | || Sbjct 186522 ACTTTACGGTGAATATGCGTGATAAGGAATACCCAAACTGGTTGAATATTTTCCTAAACA 186581 Query 70516 TAAATATAATTGAATATTTAGCCTTTTTAGGTGATAATATGCTCAATTCTGATCTATCAA 70575 | | || ||||||| | || | || ||| || |||||| | || | ||| Sbjct 186582 TCCAATCGATCAAATATTTGACATTCCTGGGCGATCATGATCTCAATGCCAATTTGTCAC 186641 Query 70576 ATGTTAAATGCAAGCAATTNNNNNNNNNTTGTCCACTCGGTGATTGTTGCCGATTTAA-- 70633 | | ||| | ||| | ||| |||| ||| ||||||||| || Sbjct 186642 ACATACCCTGCGAACAACTGATAGCCTATTGCTCACTTGGTCCCGATTGCCGATTGAACC 186701 Query 70634 ---TAATAATATTGATTATATATATATCGATTGCAAGTATAATAACACTGCAGA-TATTT 70689 | || | | || | | ||||||||||||||| ||||| | ||| ||||| Sbjct 186702 GCGTCATTAGAGTGCTG-----TGTATCGATTGCAAGTACAATAATTCAT-AGAGTATTT 186755 Query 70690 TAAATAAATTTNNNNNNNNNNNNNNNNNNNNNATAAAAATGGTAAATACAAAATTTATTA 70749 |||||||||| || ||||| | || | |||||| | Sbjct 186756 TAAATAAATTGGCCGCAATCGACTGTATAGTTATTAAAATCATTAACATCAAATTTGTCG 186815 Query 70750 AAGAAAATGTATTTTTTGATTGGATTATTAATAAACAGCATATATCACGAAAA--GCAAA 70807 || |||||||| ||||||||||||| || || | | || |||||| | || Sbjct 186816 CCGAGGCAGTATTTTTCAATTGGATTATTAAAAAGCA--ACACATGGCGAAAAGGGGCAA 186873 Query 70808 AATTACATATATATTAGATAATAAAGTATA-TAGTCAACTTGTTTCCGAACTTTATAGAA 70866 ||| || ||| || | |||||| ||||||| | || || ||||| ||||||||| | | Sbjct 186874 AATCACCTATGTACTGGATAATCAAGTATACCCGCCAGCTGGTTTCTGAACTTTATCGCA 186933 Query 70867 ATGATTTTCTATTAATTCATAAAAAATTCTTTTCAATGAGATGTAAGCGTCAACATTTTG 70926 | || ||||| || || || ||||| | | |||| | ||||| | || | ||| Sbjct 186934 ACGAGTTTCTCTTCATCCACAAAAACATAATGACAATCAAGTGTAAAAGGAAAAACTTTA 186993 Query 70927 ATATATATAATGTTAAATTTCAAGaaaataaaatccactatattaaaaatattgtagttg 70986 || | | |||| ||||||||| ||| | ||||| || |||||||||| || | | Sbjct 186994 ATGTCGACCATGTGAAATTTCAAACAAAGCATATCCATTACGTTAAAAATATAGTCATGG 187053 Query 70987 aaaagccaaatataaatttttataaaatacattttccaaatttagaaaatattgtattta 71046 |||| || | | || || || ||||| || | |||||||||||||| | Sbjct 187054 AAAAAACAGCTTCCACATTCTACTCGATCGTCTTTCCCAACATTGAAAATATTGTATTCA 187113 Query 71047 aaaa 71050 |||| Sbjct 187114 AAAA 187117 >seq587 Length=137000 Score = 114 bits (126), Expect = 2e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 7662 GAAAATAAAAACTATGAAATTGAACCATCAGTTAGATATATATCATTAACAAATTGCAAA 7721 |||| ||||| ||||||||||| || | |||||||||||| || | |||||||| Sbjct 124434 GAAAGGAAAAATTATGAAATTGAGCCGTTCACTAGATATATATCTTTGGCTAATTGCAAG 124493 Query 7722 TTTCCTCTAACAGTAACTTACAACAATTTAAAAAGTAAACAACGAATTATTTTGTA 7777 |||||| | ||||| |||| |||||||||||||| ||||||||||||||||| || Sbjct 124494 TTTCCTTTGACAGTGTCTTATAACAATTTAAAAAGCAAACAACGAATTATTTTATA 124549 Score = 105 bits (116), Expect = 8e-18 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 8182 GTTATAAAATCATCTCCCCAATTATATTGTCTATAAATTATATTTGCCTTAAGCATATTA 8241 || ||||| |||||||| |||||||||| | ||| | | || ||||||| |||||| Sbjct 124982 GTCATAAAGTCATCTCCATAATTATATTGGCCATATACCAGATGCGCCTTAATCATATTT 125041 Query 8242 ATATGTAAAAATATGCCTTCTACAATGGGAATACTTCCGAAA-AAATCTTTTCGCGGAAA 8300 | ||||||||| || |||| |||| || | | ||||| ||||| || |||||||| Sbjct 125042 AAATGTAAAAAGATCGCTTCAACAAACGGCACATCACCGAAGCAAATCATT-CGCGGAAA 125100 Query 8301 ACATATATTATTAAATAATGCTGTTATCAATGAAACTTTTAACAACAATAATTTTGG 8357 | |||||||||| ||||||| || || | | |||| ||| | ||||||||| Sbjct 125101 ATATATATTATTTAATAATGGTGGAATTAGATTTGCCTTTATCAATACTAATTTTGG 125157 >seq1658 Length=5851 Score = 96.9 bits (106), Expect = 4e-15 Identities = 178/254 (70%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 15517 ATTTTTAAGTTTGTATACTTGCCGTATGAATCtttttttttCCCGTAAAACGATTTGTCC 15576 |||||| | ||| | |||| | | || | |||||||||| ||| || |||| || Sbjct 5324 ATTTTTTATCTTGCACGCTTGACCCAAGAGTAATTTTTTTTCCAATAATACAATTTCCCC 5265 Query 15577 ATTGAATACAAAATGTTGCAAATTTAAACAAAAAGTTAATATATCCACAAGTCCTGCACA 15636 || | |||||||||||||||| ||||| | ||||||||| |||||| || | Sbjct 5264 GCCTAAAATAAAATGTTGCAAATTTCAACAACA---TAATATATCAACAAGTTCTATAAT 5208 Query 15637 TTTCTTCTCAACA--AATATGTTCAATTTGTTTACATTTTTAAATAAACATATGAAACTT 15694 ||| || | ||| |||| ||| | |||| ||| ||||||||||||||||| |||||| Sbjct 5207 TTTTTTTCCCACATTAATA-GTT-AGTTTGCTTAAATTTTTAAATAAACATAAAAAACTT 5150 Query 15695 AAATCTACAT---CATT--GTTGTTATTATTGCT-GTCATCGTCAACTATGTTAACATGT 15748 | || ||| |||| | || || || | ||||| | ||||| | ||||| | Sbjct 5149 ATATTATCATCCCCATTCATATCTTCTTCTTCATCCTCATCCTTGACTATTTCAACATTT 5090 Query 15749 GTCACATTTGAGAA 15762 | |||||| || || Sbjct 5089 GCCACATTAGACAA 5076 >seq335 Length=284022 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/120 (77%), Gaps = 21/120 (18%) Strand=Plus/Minus Query 162916 ACTTAATACATTATGCTCAC------ATGATATTTTCAACACAC--------GTATGTGA 162961 |||||||||||||||||||| ||||||||||||||| || |||||||| Sbjct 77317 ACTTAATACATTATGCTCACCATCAGATGATATTTTCAACAAACTCTCATACGTATGTGA 77258 Query 162962 ATTTTATCCTCAATCTGATCAAAAATCAGTCTCAAAGTTTATAAATTCGTCTGTTTGTAC 163021 |||||| |||||| | ||| |||||||||||||||| ||||||||| |||||| Sbjct 77257 ATTTTAGCCTCAA-------AGCAATTAGTCTCAAAGTTTATACATTCGTCTGCTTGTAC 77205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607944563656320