Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_032146.1 Length=1477 Score E Sequences producing significant alignments: (Bits) Value seq1021 107 2e-20 >seq1021 Length=114985 Score = 107 bits (118), Expect = 2e-20 Identities = 314/469 (67%), Gaps = 20/469 (4%) Strand=Plus/Plus Query 491 ACAAAAGTCCGTGCAGTGTGGGGTTATCCGGCAACGGTGACCTTTGGCGAAGCAGTATTT 550 |||||||||||||| || ||||| ||||| ||||| || || ||||| |||| | |||| Sbjct 21762 ACAAAAGTCCGTGCTGTCTGGGGGTATCCAGCAACCGTCACTTTTGGAGAAGAGGCATTT 21821 Query 551 GCACTCCCCCTGATTCAAGCGTAT-AAGAAGGGAGGATATCCTATTGCATATGGATTTGA 609 ||||| || || |||| || ||| ||||| || | ||| |||| ||||| ||||| Sbjct 21822 GCACTACCGCTTATTCGTGCATATGAAGAACATAGAACC-CCTCTTGCCTATGGTTTTGA 21880 Query 610 GACCGGCAACGCTGGTTGTAA-GAAGATGTTCCATGGTATGAAGGGCAACCACTACCTTG 668 ||||| ||||| | || ||| || ||| || | | |||| | | | | | | Sbjct 21881 AACCGGA---GCTGGAGGAAACGAATAT-TTCAATCATCTAAAGGCTCTCGATT-CTTAG 21935 Query 669 GAATTGATTTCACCAGTTTTGATAAGACCCTTCCACCATGGCTGGTCTCCACG--GCCTT 726 |||||||||| | | |||||||| | | ||| | ||||| | | | | || || Sbjct 21936 GAATTGATTTTAAGAAACTTGATAAGTCATTACCAGCTTGGCT--TATTGAAGTTGCATT 21993 Query 727 TGACATACTGGCCTATAACATTGATTTTCTA-CACTATCGAGATCACGGAATTGC---TC 782 ||| | | ||| | || || | |||| | | ||| |||||| | | | | | Sbjct 21994 TGATACATTGG-TTGCAAATTTAAATTTCAAGAAGTATGAAGATCATGTAGTCCCAATAC 22052 Query 783 GTGTCAAATCAATGGTCCATATGTTTAACGTTATTAAGGATTACGCCATTAACACGAAAA 842 | | | ||| | | |||||| | ||| | ||| || || | || || | Sbjct 22053 TTAGAAGCTTAAT--TAC-GATGTTTCAAGTTGTGAAGACGTATTGAATAAGTACTAATA 22109 Query 843 TACGCATGTGTAATGGAGAAAGATATATAAAGAAAAGTGGTCTTGCAAGTGGAAGTTACT 902 | | ||||| ||||| ||| | ||||| || | | ||| | || ||||| || || | Sbjct 22110 TCCAGATGTGCAATGGTGAACGTTATATGAAAAGATCCGGTTTAGCTAGTGGTAGCTATT 22169 Query 903 TTACACAGCTTGTTGGCAGTGTTTGTAACTACCTGCTCCTTACTTATGC 951 ||||||| ||||| || || ||||||||||| | || ||||||||||| Sbjct 22170 TTACACAACTTGTAGGGAGCATTTGTAACTACGTTCTTCTTACTTATGC 22218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4617407382588