Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_032157.1 Length=1694 Score E Sequences producing significant alignments: (Bits) Value seq615 118 1e-23 seq165 118 1e-23 >seq615 Length=258702 Score = 118 bits (130), Expect = 1e-23 Identities = 185/264 (70%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 995 GAATAATCGAG---TCGGTGAAGCTTGGTCACCTAATGATATCGAGCAAGAATGGAACAC 1051 |||||||| || | || ||||| ||||| || | || | || || |||||||||| Sbjct 521 GAATAATCCAGAGATTGGAGAAGCATGGTCTCCGCAAGAATTAGAACATGAATGGAACAG 580 Query 1052 TCGGTGTCTAGGATATGCCCCATCCGTAGAATTGCCTTCATTACAGTTGCAAATACTGAA 1111 || || |||| ||| |||||||||| ||||| || | | || | ||| | || Sbjct 581 CCGTTGCATAGGTTATACCCCATCCGTTGAATTACCAGCTATGCAAATTTCAATTTTCAA 640 Query 1112 TATGGCGGGTATATCTTCTGAAAATTTTCCTTCGGATTGTGAAGGTTTACTTATAAATAT 1171 | || | ||| || || ||||||||||| |||||||| ||||| | || ||| | Sbjct 641 TCATGCTGCTATCACTATGGATAATTTTCCTTCCGATTGTGATTGTTTATTAATTAATGT 700 Query 1172 TAGATTGTTAAATTCTATTCAAAAATATTTACTTGAAATACCTAGCTTTGAATCAGGTCC 1231 |||||| | |||| |||||| |||||| |||||| | || ||||| || | ||| Sbjct 701 TAGATTAATGAATTTAGTTCAAATATATTTGACTGAAATCGCAAGTTTTGAGTCCGATCC 760 Query 1232 TATTCCTGCTAATTTAACTGGCTC 1255 || | ||||||||||||| || Sbjct 761 GATGTCCACTAATTTAACTGGTTC 784 >seq165 Length=565763 Score = 118 bits (130), Expect = 1e-23 Identities = 185/264 (70%), Gaps = 3/264 (1%) Strand=Plus/Minus Query 995 GAATAATCGAG---TCGGTGAAGCTTGGTCACCTAATGATATCGAGCAAGAATGGAACAC 1051 |||||||| || | || ||||| ||||| || | || | || || |||||||||| Sbjct 8131 GAATAATCCAGAGATTGGAGAAGCATGGTCTCCGCAAGAATTAGAACATGAATGGAACAG 8072 Query 1052 TCGGTGTCTAGGATATGCCCCATCCGTAGAATTGCCTTCATTACAGTTGCAAATACTGAA 1111 || || |||| ||| |||||||||| ||||| || | | || | ||| | || Sbjct 8071 CCGTTGCATAGGTTATACCCCATCCGTTGAATTACCAGCTATGCAAATTTCAATTTTCAA 8012 Query 1112 TATGGCGGGTATATCTTCTGAAAATTTTCCTTCGGATTGTGAAGGTTTACTTATAAATAT 1171 | || | ||| || || ||||||||||| |||||||| ||||| | || ||| | Sbjct 8011 TCATGCTGCTATCACTATGGATAATTTTCCTTCCGATTGTGATTGTTTATTAATTAATGT 7952 Query 1172 TAGATTGTTAAATTCTATTCAAAAATATTTACTTGAAATACCTAGCTTTGAATCAGGTCC 1231 |||||| | |||| |||||| |||||| |||||| | || ||||| || | ||| Sbjct 7951 TAGATTAATGAATTTAGTTCAAATATATTTGACTGAAATCGCAAGTTTTGAGTCCGATCC 7892 Query 1232 TATTCCTGCTAATTTAACTGGCTC 1255 || | ||||||||||||| || Sbjct 7891 GATGTCCACTAATTTAACTGGTTC 7868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5311778416560