Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20elevatus_20bari_20[genbank_20GCA_5F900068365.1_202017- 04-25] 302,727 sequences; 364,783,738 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7802 125 6e-24 seq18397 118 8e-22 >seq7802 Length=17912 Score = 125 bits (138), Expect = 6e-24 Identities = 882/1415 (62%), Gaps = 48/1415 (3%) Strand=Plus/Plus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 || || || || || | ||||||||| |||||||||||||| |||||||| |||||||| Sbjct 2284 TAAATATTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAG 2343 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGA 65581 ||||| ||||| ||||| | ||| | || || ||||| || | || | || || | Sbjct 2344 GCAGTCGGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCT 2403 Query 65582 CGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGT 65641 | | |||||| ||| | ||| | | | || | | ||||||||| | Sbjct 2404 TTAAGGACAGCCCAGTCCCAAA--GGTCTGTAG--GAGTT--TTGTCCCACATATCATAC 2457 Query 65642 TGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTG 65701 || ||| | || || || || || | | | ||| | || || | | Sbjct 2458 TGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCA 2517 Query 65702 GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTA 65761 || | || ||| || | || | ||| || ||||||| || || || || || |||| Sbjct 2518 GCTAATTCACAACTAGCTTCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTG 2577 Query 65762 AGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGA 65821 || ||| | || || ||||| | || | ||||| ||||| | || |||| Sbjct 2578 AGAAGTATTGCTTTCTCACTTTCGTAAGATATTCTCATCAACACAAACGCATCTGCCATG 2637 Query 65822 CCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACA 65881 || ||||| |||||||| || || | ||| | || ||| ||| | | || ||||| ||| Sbjct 2638 CCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACA 2697 Query 65882 GGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGT 65941 || || |||| | ||| |||| || ||||| | || || | | ||| | Sbjct 2698 GGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCT 2757 Query 65942 CGCAATTGTTCGAAATCAAA-ATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTT 66000 |||| || |||| ||| |||| || | |||||| | Sbjct 2758 TTTAATTTTTTAAAATTAAATCTGTT-------AT------------TTTCAACAAACAT 2798 Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 | ||| || | || || |||||||| || || | || || | || || | || Sbjct 2799 GTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCAC 2858 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 || || ||||| ||||| || || || ||||| | ||| | |||||||||||| | Sbjct 2859 AACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCT 2918 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 || || |||||||| |||| |||||| || || || ||||| ||||||| || || || Sbjct 2919 GTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAAT 2978 Query 66181 GGCGTGCCAAA------GAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTC 66234 | | ||| | |||| | || ||| || | || ||| ||| Sbjct 2979 TGACTTCCATAACTCTTGAGCTC-TGACTT-GTTTTATAAATCG-------TTTTTCTTC 3029 Query 66235 GTAATGTTCG---TAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 | || || | || || | ||| || || || | || | || | ||||| Sbjct 3030 TTCATATTTGGTATATAGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACA 3089 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 | || |||||||| || |||| | |||||| |||||| | |||||| ||||| Sbjct 3090 GTCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAGATC 3149 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTT 66410 |||||||| | || || || || || | |||| || || | || ||| || | Sbjct 3150 TGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-TTCT 3208 Query 66411 TGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470 | || || | ||| ||||| ||||| |||||||| || || | || || || || | Sbjct 3209 TCTTTAAATCCAAGAATTCAAATATGTCCGCATGCCAAGGCTCTAAATAAATTGCAAATG 3268 Query 66471 AGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCA 66530 ||| ||||||| |||||||| || || || | || |||||| | || | || Sbjct 3269 CGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCA 3328 Query 66531 ACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCC 66590 |||| || || || || || || ||||| ||||| | ||| || || | || | Sbjct 3329 ACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTC 3388 Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGG 66650 || || || | ||| || ||||| || | || || || ||||| | Sbjct 3389 TGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTT 3448 Query 66651 CCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAAC 66710 | || || || || |||||| || | || || | | ||| | || || Sbjct 3449 TTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAACAGGAGG 3508 Query 66711 TAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAAT 66770 ||| || || |||||||| || ||||| | || || | || || ||||| || | Sbjct 3509 AAAGCTGTGGCCGTGGTGTGGCTGCGGAGAACAATGTAGGGCTTGCATGTGTAAAATATT 3568 Query 66771 GGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGA 66830 ||||| ||| || || | ||| || |||||||| ||| |||||||| || | Sbjct 3569 TCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTA 3628 Query 66831 GTGCACA-TCGCATCAGGAGGTATTGAGGCCGTTC 66864 || | | || ||| || | || |||||||| ||| Sbjct 3629 -TGGAGACTCTCATAAGCATGTGTTGAGGCCTTTC 3662 >seq18397 Length=6272 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 || |||||||| || || || |||| || ||| || || || ||||| || | Sbjct 1357 TTATTCAATGCAATTGAAACTCTACCATGTGTTAAGAAAAAGGCAGACTGGGCGTTACAG 1416 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| ||| | |||||||||||||| ||||| | | || ||||| | ||| ||| Sbjct 1417 TGGATCGGCAGCAAGACGGCTACATTTGGAGAACGTATAATTGCTTTTGCAGCGGTTGAG 1476 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || |||||||| || ||||| |||| ||||||||||| ||||| || || ||| Sbjct 1477 GGAATATTTTTCTCAGGCAGCTTTGCTTCAATATTTTGGTTGAAAAAACGAGGTCTGATG 1536 Query 61576 CCCGGTCTGACCTTCAGCAATGA 61598 ||||| |||| ||||||||||| Sbjct 1537 CCCGGATTGACTTTCAGCAATGA 1559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396101178703280