Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq48588 168 5e-37 seq296465 116 3e-21 >seq48588 Length=2845 Score = 168 bits (186), Expect = 5e-37 Identities = 893/1416 (63%), Gaps = 50/1416 (4%) Strand=Plus/Plus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 || || || || || | |||||||| |||||||||||||| |||||||| |||||||| Sbjct 651 TAAATATTTGATGTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAG 710 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGA 65581 ||||||||||| || || | ||| | || || ||||| || | || | || || | Sbjct 711 GCAGTTGGCATAGGTGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCT 770 Query 65582 CGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGT 65641 | | |||||||||| | ||| | | | | | | ||||||||| | Sbjct 771 TTGAGGACAGCCCAGTTCCAAA--GGTCTGTAGGAGTTTT----GTCCCACATATCATAC 824 Query 65642 TGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTG 65701 || ||| | || || || || || | | | ||| | || || | | Sbjct 825 TGGAGGATACCTTGGCTAGCTGGACTTCCTTGATATGTGCTGTATGCGCCTTCTTTTTCT 884 Query 65702 GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTA 65761 || | || ||| || | || | ||| || ||||||| || || || || || ||||| Sbjct 885 GCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTA 944 Query 65762 AGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGA 65821 || ||| | || || ||||| || || | ||||| ||||| || || |||| | Sbjct 945 AGGAGTATTGCTTTCTCACTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATA 1004 Query 65822 CCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACA 65881 || ||||| ||||||||||| || || || | || ||| ||| | | || ||||| ||| Sbjct 1005 CCCTGAACACCAATACCGATAGGTCGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACA 1064 Query 65882 GGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGT 65941 || || | || | ||| || | || ||||| | ||||| | | ||| | Sbjct 1065 GGATAAAAGTTAACATCAATGACTTTGTTTAAATTTTGAGTCACAATCTTTGTGATTTCT 1124 Query 65942 CGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTG 66001 |||| || |||| ||| | || | || ||||||||| Sbjct 1125 TTTAATTTTTTAAAATTAAA---TCTATTATTTTCA---------------ACAAACTTG 1166 Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||| || | || || |||||||| || || | || || | || || | ||| Sbjct 1167 TTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACA 1226 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 | || ||||| ||||| || || || ||||| | ||| | |||||||||||| | Sbjct 1227 ACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTCCTG 1286 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| |||||||| || | ||| || || || || ||||| ||||| | || || || Sbjct 1287 TTGCAAGCATCCTTATATAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTATAATT 1346 Query 66182 GCGTGCCAAA------GAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCG 66235 | | ||| | |||| | || ||| || |||| ||| | ||| Sbjct 1347 GACTTCCATAACTCTTGAGCTC-TGACTTGTTT-TATAAACCGT------TTTTC-TTCT 1397 Query 66236 TAATGTTCG---TAGAGGTGTTCGAAGGATTCACCCCATACT--TCGGACAGACATGGAC 66290 | || || | || || | ||| || | | | ||||| || | || | |||| Sbjct 1398 TCATATTTGGCATATAGTTCTTCAAAT--TCCTCTCCATAACAGTCAGCGAGGCCAGGAC 1455 Query 66291 ACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGAT 66350 | | || |||||||| || |||||| |||||| |||||| | |||||| |||| Sbjct 1456 AATCATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACTCTTTTCATAAACAGAT 1515 Query 66351 CAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTT 66409 | |||||||| | ||| || || || || | ||||| || || | || ||| || Sbjct 1516 CTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTCTTCCTTACCTGTG-TTC 1574 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || || ||||||||||| ||||| |||||||| || || | ||| || || || Sbjct 1575 TTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAAAT 1634 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || ||||||| |||||||| || || || | || ||||||| | || | | Sbjct 1635 GCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACACTCTC 1694 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 ||||| || || || || || || ||||| || || | || || || | || Sbjct 1695 AACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTATATAAGACCCCTGGGCT 1754 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCG 66649 | || || || | ||| || |||||||| | || || || ||||| | Sbjct 1755 CTGATGCAATGTGTATGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCACATTGT 1814 Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709 | || || || || ||||| || | || || | | ||| |||| || Sbjct 1815 TTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAGCAAGAG 1874 Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769 ||| || || | ||||| || || ||||| || || || | || || ||||| || Sbjct 1875 GAAAGCTGTGGCCTCGGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAATAT 1934 Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCG 66829 | ||||| ||| || || | ||| || |||||||| ||| |||||||| || Sbjct 1935 TTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCT 1994 Query 66830 AGTGCACA-TCGCATCAGGAGGTATTGAGGCCGTTC 66864 | || | | || ||| || | || |||||| | ||| Sbjct 1995 A-TGGAGACTCTCATAAGCATGTGTTGAGGTCTTTC 2029 >seq296465 Length=573 Score = 116 bits (128), Expect = 3e-21 Identities = 171/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 ||||||||||| || ||||| |||| | ||| ||| || || ||||| || | Sbjct 348 TTGTTCAATGCAATTGAGACTCTACCATGTATTAAGAAGAAGGCAGACTGGGCGTTACAG 289 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| ||| | || || | |||||| ||||| | | || ||||||| ||| ||| Sbjct 288 TGGATCGGCAGCAAGACTGCCATATTTGGAGAACGTATTATCGCTTTTGCGGCGGTTGAG 229 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || |||||||| || ||||| |||| ||||||||||| ||||| || || ||| Sbjct 228 GGAATATTTTTCTCAGGCAGCTTTGCTTCAATATTTTGGTTGAAAAAACGAGGGCTGATG 169 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 ||||| | || ||||||||||| | || || | || || || ||| | || ||||| Sbjct 168 CCCGGATTAACTTTCAGCAATGAACTTATTTCTAGGGATGA-GGTATGTTTAGTAATTTT 110 Query 61636 G 61636 | Sbjct 109 G 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396053713556720