Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1216 1031 0.0 seq14493 271 2e-68 seq57234 197 4e-46 seq3145 136 1e-27 seq1464 125 2e-24 >seq1216 Length=179962 Score = 1031 bits (1142), Expect = 0.0 Identities = 1023/1315 (78%), Gaps = 28/1315 (2%) Strand=Plus/Minus Query 1669 ATGTCAATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACA 1728 |||||||||||||||||||| ||||| || || | || ||||||||||||||||||||| Sbjct 72271 ATGTCAATTATTACTGATGTTTACGCTCGCGAGATTCTAGACTCACGCGGTAACCCAACA 72212 Query 1729 CTTGAAGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGA 1788 | ||||||||||| ||||| ||| ||||| ||||| || || |||||||||||||| Sbjct 72211 ATCGAAGTAGAAGTATACACAGAAAGCGGTGCTTTCGGCCGTGGAATGGTTCCTTCAGGT 72152 Query 1789 GCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGT 1848 || |||||||||||| |||||||||| ||| | ||||| || |||||| ||||||| || Sbjct 72151 GCTTCAACTGGTGAATACGAAGCAGTTGAATTACGTGACGGAGACAAATCTCGTTATGGC 72092 Query 1849 GGTCTTGGT--ACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGA-GCACATC 1905 ||| ||| | ||||| || ||||| |||||||||||| | |||||||| ||| ||| Sbjct 72091 GGTAAAGGTGTAATCAAA--GCTGTTGACAACGTAAACAACATCATTGCTGAAGCA-ATC 72035 Query 1906 ATCGGATTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGT 1965 || || | ||| |||||||| ||| | ||| ||| |||||||||||| | ||||| Sbjct 72034 ATTGGCTACGATGTACGTGACCAAATGGCTATCGACAAAGCAATGATCGCTTTAGACGGA 71975 Query 1966 ACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCA 2025 ||||| |||||||||||| | ||||| ||||||||||||||||| || |||||||| || Sbjct 71974 ACTCCTAACAAAGGTAAATTAGGTGCGAACGCTATTCTTGGTGTTTCAATCGCTGTTGCT 71915 Query 2026 CGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACT 2085 || ||||| ||||||||||| ||||| || | ||| |||||| |||||||||||||| Sbjct 71914 CGTGCAGCAGCTGACTACCTAGAAGTACCTTTATACCACTACCTAGGCGGATTCAACACA 71855 Query 2086 AAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCA 2145 ||||| | |||||||||||||||||||||||||||||||| || || | || || Sbjct 71854 AAAGTATTACCAACTCCAATGATGAACATCATCAACGGTGGATCACATGCGGATAACTCA 71795 Query 2146 ATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTT 2205 |||| ||||||||||| ||||| | |||| ||| || ||||||||||||||||| || Sbjct 71794 ATCGACTTCCAAGAATTCATGATCATGCCTGTTGGCGCGCCAACATTCAAAGAAGCACTA 71735 Query 2206 CGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA 2265 ||| |||||| ||| | ||||| || | |||| | ||| |||||| | | | Sbjct 71734 CGTATGGGTGCGGAAGTATTCCATGCATTAGCTGCAATCTTGAAATCTCGTGGATTAGCA 71675 Query 2266 ACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTT 2325 || | || |||||||||||||| || || ||| | | || ||||| ||| | Sbjct 71674 ACTTCAGTTGGTGACGAAGGTGGATTTGCTCCTAACCTTGGTTCAAACGAAGAAGGTTTC 71615 Query 2326 GAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATC 2385 ||| |||||| |||| |||||| ||||| ||||| || ||||||||||| || | Sbjct 71614 GAAGTAATCATCGAAGCAATCGAAAAAGCTGGCTATGTTCCTGGTAAAGACGTTGTTCTT 71555 Query 2386 GGACTTGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAA---GTTTACGACTAC 2442 | | | ||| ||| || || ||||||||||| |||| ||| ||||||| | Sbjct 71554 GCAATGGACGCTGCTTCTTCAGAATTCTACGACAAAGAA---AAAGGTGTTTACGTATTA 71498 Query 2443 ACTAAATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTT 2502 || | | ||| |||||| | || ||| ||| ||| | | | Sbjct 71497 GCTGA---TTCAGGCGAAGGC------GAAAAAACAACTGACGAAATGATCAAATTCTAC 71447 Query 2503 GAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGAC 2562 |||||||| || ||||||||||||||| |||| |||||||| | |||||||||||| Sbjct 71446 GAAGAATTAGTATCTAAATACCCAATCATCTCTATTGAAGATGGATTAGACGAAAACGAC 71387 Query 2563 TGGGACGGTT---GGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGT 2619 ||||| || | ||||| | || ||| ||| || | ||||||||||| || ||| Sbjct 71386 TGGGATGGATTCAAGAAAT---TGACAGAAGTTCTAGGCGACAAAGTTCAATTAGTGGGT 71330 Query 2620 GACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCT 2679 |||||||| |||||||| ||||||| | |||| ||||||| | | || |||| Sbjct 71329 GACGACTTGTTCGTAACAAACACTGAAAAACTTGCTGAAGGTATCGAAAAAGGAATTGCT 71270 Query 2680 AACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATC 2739 ||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||| Sbjct 71269 AACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACAGAAACTTTCGAAGCAATC 71210 Query 2740 GAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAA 2799 |||||||| ||||||||||| ||||| |||||||| || || ||||| |||||||| ||| Sbjct 71209 GAAATGGCTAAAGAAGCTGGTTACACTGCAGTAGTTTCTCATCGTTCTGGTGAAACAGAA 71150 Query 2800 GATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCA 2859 |||||||||||| ||||||| ||||||||||| |||||||| ||||| || |||||||| Sbjct 71149 GATTCAACAATCTCTGATATCGCAGTTGCAACAAACGCTGGCCAAATCAAAACAGGTTCT 71090 Query 2860 TTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTT 2919 | ||||||||||||||| |||| |||||||||||||| | |||||||||||||||||| Sbjct 71089 CTATCACGTACTGACCGTGTTGCGAAATACAACCAATTATTACGTATCGAAGACCAACTT 71030 Query 2920 GGTGAAGTTGCAGAATACCGTGGTTTGAAATCATTCTACAACTTGAAAAAATAAA 2974 |||||||||||||| ||| ||||||||||| ||||||||||| |||||| ||| Sbjct 71029 GGTGAAGTTGCAGAGTACAAAGGTTTGAAATCTTTCTACAACTT-AAAAAACAAA 70976 >seq14493 Length=87834 Score = 271 bits (300), Expect = 2e-68 Identities = 764/1153 (66%), Gaps = 39/1153 (3%) Strand=Plus/Plus Query 44805 CTTCTCCTGTTTGAGTGTTATAGAG---TCTACCAGAGTAGCTTGTGTATTGAGGTGTAA 44861 |||| |||||||| || | |||| || |||| | ||| || |||| ||||| || Sbjct 76134 CTTCACCTGTTTGGGTATCGTAGACAGCTCCACCATAATAG---GTATATTTAGGTGAAA 76190 Query 44862 CATATTGACC-TGAGGTTCTAAATGCGACAGTTTGCTTATTATCAGGAGATAGGAGGTCT 44920 | | | ||| | | | || ||||| || ||||||||||| || | || ||| Sbjct 76191 CGAAGTCACCATCACGG----AAAGCGACTAACTGGTTATTATCAGGTGAGAAAAGATCT 76246 Query 44921 TGTCCCATCTGGATATAAGAGCTAGTGTCAACACCAAGAATGTGAAGGAGGGTTGGGAGG 44980 ||||| | ||||||||| | | |||||||| | | ||||| | || || | Sbjct 76247 TGTCCTAATTGGATATAATTTTTTGAATCAACACCTAACAAATGAAGCAATGTCGGTAAA 76306 Query 44981 GCATCAACTTCACCACCAAATGTGTTAGAGATGCCACCTCCAGTATATCCTGGGATGTGA 45040 ||||| |||| ||||| | || | | ||| |||||| || | ||| ||||| || Sbjct 76307 GCATCGACTTGGCCACCGTACGTATGATTGATTCCACCTTTTGTTTGTCCGGGGATATGG 76366 Query 45041 ATCATGTAAGGGACACGTTGAAGCATGGCTTTATCATAATTTGACCAAGTCTCAGAGTTC 45100 ||||| || || || ||||| | | || || ||| |||||| ||| ||| | | Sbjct 76367 ATCATATATGGCACGCGTTGCATCGCTGCATTGTCAAAATTTGTCCATGTCGAACTTGTT 76426 Query 45101 TTCCCGAGCAGTTCCGCTA--GATTACTGCTTCGCATATCAGAGATACCGTAGTGGTCAC 45158 || || | | ||| |||| |||| || ||| ||| |||||| ||||||||||||| Sbjct 76427 TTACCAACTAATTCAGCTAAAGATT--TGTTTCTTGTATTAGAGATCCCGTAGTGGTCAC 76484 Query 45159 CATACATAACAATAATCGAATTATCATAAAGGCCAGTTTCCTTAAGGTAATCAAAGAAGT 45218 | || | || || | || || ||||| | |||| || | || | || | ||||| | Sbjct 76485 CGTATAAGACGATGACTGAGTTTTCATACAAGCCACTTACTTTTAAATAGTTGAAGAATT 76544 Query 45219 CTTTGATTGCAGAGTCAAGATAGTTGGCTGTTGCAAAATACCCGTTAACTGTTTCGTCTT 45278 ||| | || | ||| | |||||| ||||| ||||| || || || | |||||| || | Sbjct 76545 CTTCTACCGCTGTGTCTAAATAGTTAGCTGTCGCAAAGTAACCATTGATTGTTTCATCGT 76604 Query 45279 TTGTGTCAGCGAGTGGGAAACCTTGTTCGTTTTTGTCGCCTG-ACAGGGAAGTGTATGGG 45337 | || | ||| | |||||| || ||| | || | || | ||| || ||| Sbjct 76605 TCGTATTAGCTACTGGGAATCCAGCTTCCTCATT----CGTGAATTTTGAA---TAAGGG 76657 Query 45338 TAGTGGTTAGATACGGTTAGGTATTTAACATAGAAAGGCTGTTGCATTTGTTCCAGATAT 45397 |||| || ||||| | | | |||| ||||| || |||||||| |||| | |||| Sbjct 76658 AAGTGATTCGATACAGCAATGAATTTTGAGTAGAAGGGTTGTTGCATCCGTTCTAAATAT 76717 Query 45398 TTGATGGAATCTGAAAACATGTACTTATCATTAAGACCGTATTGGAAGGAGTTTTCATCG 45457 | || ||| | | ||| | ||||||| | |||||||||||| ||||| |||| Sbjct 76718 TGGACGGATTGTTCAAAGAATGGTTTATCATGTAAACCGTATTGGAATGAGTT---ATCG 76774 Query 45458 GTTTTCTCAGTGAAAG-CTGATGAGTCAAAGAAGTAGTTATAACCCCAATGTTTATAGGT 45516 ||| | || | || ||| | ||||||||||| | ||| || || ||||| || Sbjct 76775 TCATTCAC-GTCATAGTATGAAGCATCAAAGAAGTAATCATACCCAAAACTCTTATAAGT 76833 Query 45517 ATTATTGCGGTTCCAGAAGGATCCAGTGTTTCCGTGGAAAACAGCTGAAGTATAGCCACT 45576 | || ||||||||||| | |||| || || ||||| | || |||||||| | Sbjct 76834 TTCGTTACGGTTCCAGAATGTACCAGCATTCCCATGGAATGCTGCACTGGTATAGCCTTT 76893 Query 45577 CGTTTGAGCTAGGATAGATGGTGCAGCGTAAGCTGTATTGGTACCACCGTAGTTTACCAT 45636 ||||| || ||| |||||| || | ||||| ||||||| |||| | Sbjct 76894 TGTTTGTTTTAAAATATTTGGTGCTGCTTGGAAAGTATTCTTACCACC-AAGTTGAGTGA 76952 Query 45637 ATA-TGACCCTGTACTTAGTCCGAAGAGTGATGTTTCCATCAAGGTTTCAGCATCAGAAG 45695 ||| || ||| | | ||||| | ||| |||||||||| || || |||||| | Sbjct 76953 ATAGCGATCCTTGGTTCAAACCGAATAATGAATTTTCCATCAATGTCTCTGCATCACTTG 77012 Query 45696 TTTTTCCTGATTTAACTTGGTGGAAGAAGTT-TGAAAAGGCT-AGGGTTTCATTTGAGTG 45753 ||||||| | ||| ||||| |||||||| || | |||| || | |||||||| || Sbjct 77013 TTTTTCCAGCTTTTACTTGATGGAAGAAATTGTCAAAA--CTAAATGTTTCATTACTATG 77070 Query 45754 GTAAATGGAATTAAGGAATGGTGTTACTTCATAAGACTGACCA---TCTACTTGGAGCTT 45810 | | | ||| | ||| ||||||||||||| ||| || ||| || || Sbjct 77071 GAATAAACTATTCAAGAAAGGTGTTACTTCATGTTCTACGCCATTTTCGTCTTTCAGTTT 77130 Query 45811 GTAATCAATAAGAAACTGTTGGAAACTCTCCAAGTGAATAACGATAACGTTTCTTCCTTT 45870 ||||| || | ||||||||| || || || || || ||| |||||| || | || | Sbjct 77131 ATAATCGATCACAAACTGTTGTAAGCTTTCTAAATGGATATAGATAACATTCTTACCCTC 77190 Query 45871 AGCAATTCCGTAG-TACTTAGGATCAGGTGCTGCATAGTGCTCCTTAACATAAGCTTCAA 45929 ||| | ||| ||| | | || | | ||| ||||| || || || || |||| | | | Sbjct 77191 AGCTAATCCATAGAGATCTTGGTTTGGTTGC-GCATAATGTTCTTTGACGTAAGTTGCTA 77249 Query 45930 CCTTTTTCATGTC 45942 | | |||||| || Sbjct 77250 CTTCTTTCATATC 77262 >seq57234 Length=9981 Score = 197 bits (218), Expect = 4e-46 Identities = 275/381 (72%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 2514 TAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTG 2573 ||| ||||| ||||| || | || ||||||||| ||| ||| || || || || | Sbjct 5555 TAAAAAATATCCAATTATTTCAATTGAAGATGGTTTGGCTGAAGGTGATTGAGAAGGATT 5496 Query 2574 GAAATCTCTTACT-GAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCG 2632 |||| | ||| | ||| | |||||| | || | |||||||| || || |||| Sbjct 5495 TAAAT-TATTATTAGAAAAATCAGAAGGTAAATTCCAGGTTGTTGGTGATGATTTATTCG 5437 Query 2633 TAACTAA--CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690 | ||||| || ||| || || |||| |||| || ||| |||||| ||| | | Sbjct 5436 TTACTAATCCAAAAATTA--TTAAAGAAGGAATTGTTAAAAACGTTGCTAATTCAGTATT 5379 Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 || ||| | || ||||| || || || ||||||||| | || ||||| |||||| | Sbjct 5378 AATTAAACTAAATCAAATTGGAACATTAACTGAAACTATGGAGGCTATTGAAATGTGTCA 5319 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810 | ||||||| | |||||||||||||| || ||||| || |||||||||||| |||| || Sbjct 5318 AAAAGCTGGGTGAACAGCAGTAGTATCTCATCGTTCTGGGGAAACTGAAGATACAACGAT 5259 Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870 ||||| | ||||| || ||| |||| |||||||| ||||||||| ||||| | || Sbjct 5258 TGCTGACTTAGCAGTAGCTTTTAATACTGGACAAATTAAAACAGGTTCAATGTCAAGAAC 5199 Query 2871 TGACCGTATTGCTAAATACAA 2891 ||| ||| |||| ||||| || Sbjct 5198 TGATCGTGTTGCAAAATATAA 5178 >seq3145 Length=45091 Score = 136 bits (150), Expect = 1e-27 Identities = 233/332 (70%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 12378 AAGAGGAGAAAAAACATGATTAACAATACAGTTTTAGTTGGAAGATTAACTAAAGACCCA 12437 ||||||| ||||| |||||||||||| |||||| ||| | ||||| |||||||| Sbjct 1781 AAGAGGA--AAAAATATGATTAACAATGTGACTTTAGTAGGACGTTTAACGAAAGACCCT 1838 Query 12438 GAGTTTAAATACAC-AG-GTAGCAACATCGCAGTCGCATCTTTCAGTCTTGCGGTTAACC 12495 || || || || || | | || | | || || | || | ||||| ||||| | Sbjct 1839 GATTTGCGCTATACGAGCGGTGGAAAA--GGTGTGGCTACATTTACCCTTGCAGTTAATC 1896 Query 12496 GTAATTTTA---AAGACGCTAACGGAGAGCGTGAAACTGACTTTATTAACTGTGTCATTT 12552 | || |||| | | || ||||||||||||| | ||||| || | ||||| |||| Sbjct 1897 GAAACTTTACCAATCAAGC---CGGAGAGCGTGAAGCAGACTTCGTTCAATGTGTGATTT 1953 Query 12553 GGCGACAACAGGCTGAAAATTTGGCTAACTGGGCCAAAAAAGGGGCATTGATTGGCATTA 12612 || | ||| || |||| ||||||| | || | || | ||| | ||| | | Sbjct 1954 GGAGGAAACCAGCGGAAACACTGGCTAATTATGCTCGCAGGGGAACCTTGCTAGGCGTGA 2013 Query 12613 CTGGACGCATTCAAACACGTAGCTACGAGAATCAGCAAGGTCAACGAGTATATGTGACAG 12672 | ||||| |||||||||||| || || ||||||||||| ||||| || ||||| || | Sbjct 2014 CCGGACGAATTCAAACACGTTCTTATGACAATCAGCAAGGGCAACGTGTTTATGTAACGG 2073 Query 12673 AAGTTGTCGCTGAAAATTTTCAAATGCTAGAA 12704 ||||||| || || ||||||||| || | ||| Sbjct 2074 AAGTTGTAGCAGAGAATTTTCAATTGTTGGAA 2105 >seq1464 Length=66918 Score = 125 bits (138), Expect = 2e-24 Identities = 221/322 (69%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 12394 TGATTAACAATACAGTTTTAGTTGGAAGATTAACTAAAGACCCAGAGTTTAAATACACAG 12453 ||||||| || || |||||||| | | || ||||| ||||| || ||| ||| Sbjct 17855 TGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACAT 17914 Query 12454 GTAGCAACATCGCAGTCGCATCTTTCAGTCTTGCGGTTAACCGTAATTTTAAAGACGCTA 12513 || || || || ||| | |||| | | || || || ||||| || | | | Sbjct 17915 CAAGTGGCACTGCTGTAGCAACGTTCACTTTAGCTGTCAATCGTAACTTCACGAGCCAAA 17974 Query 12514 ACGGAGAGCGTGAAACTGACTTTATTAACTGTGTCATTTGGCGACAACAGGCTGAAAATT 12573 |||| | ||||| | || |||||||| ||||| ||||||||| || || |||| Sbjct 17975 ACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAGAAACAC 18034 Query 12574 TGGCTAACTGGGCCAAAAAAGGGGCATTGATTGGCATTACTGGACGCATTCAAACACGTA 12633 | || |||| || | ||||| | | | || | ||||| || |||||||| ||| Sbjct 18035 TAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAACGCGTT 18094 Query 12634 GCTACGAGAATCAGCAAGGTCAACGAGTATATGTGACAGAAGTTGTCGCTGAAAATTTTC 12693 || || ||||| ||||| ||||| || || || |||||||| || |||||||| || | Sbjct 18095 CTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTCC 18154 Query 12694 AAATGCTAGAAAGTCGTGCAGC 12715 || | | |||||||||||||| Sbjct 18155 AATTATTGGAAAGTCGTGCAGC 18176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155741771391696