Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3050 212 9e-53 seq3035 212 9e-53 seq2228 212 9e-53 seq3069 210 3e-52 seq3871 206 4e-51 seq3070 206 4e-51 seq3864 190 3e-46 seq3861 123 4e-26 seq2467 109 8e-22 >seq3050 Length=1312 Score = 212 bits (234), Expect = 9e-53 Identities = 186/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 1207 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 1150 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 1149 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 1090 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 1089 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 1033 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 1032 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 988 >seq3035 Length=1372 Score = 212 bits (234), Expect = 9e-53 Identities = 186/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 1028 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 1085 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 1086 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 1145 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 1146 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 1202 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 1203 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 1247 >seq2228 Length=269593 Score = 212 bits (234), Expect = 9e-53 Identities = 186/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 268321 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 268264 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 268263 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 268204 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 268203 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 268147 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 268146 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 268102 >seq3069 Length=1013 Score = 210 bits (232), Expect = 3e-52 Identities = 186/227 (82%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 192 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 249 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | | Sbjct 250 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 309 Query 120 -ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| ||| | ||||| || || || | ||| | | |||||||||||||||||| Sbjct 310 GACCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGC 366 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 367 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 412 >seq3871 Length=1039 Score = 206 bits (228), Expect = 4e-51 Identities = 185/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 894 GTACAAAGGGCAGGGACGTTATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 837 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 836 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 777 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 776 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 720 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 719 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 675 >seq3070 Length=1106 Score = 206 bits (228), Expect = 4e-51 Identities = 185/226 (82%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | Sbjct 914 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-C 857 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 856 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 797 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || | | | | ||| | | ||||||||||||||||||| Sbjct 796 GCCCGGGCCTCTAGGCCAGGGAGGAACATGC--TGATTCCTTCAGTGTAGCGCGCGTGCG 739 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 738 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 694 >seq3864 Length=1207 Score = 190 bits (210), Expect = 3e-46 Identities = 182/226 (81%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| | Sbjct 473 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTCC--GACTC-CGCTTACTAGGAATT-C 418 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 417 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 358 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| | ||||| || || || | ||| | | ||||||||||||||||||| Sbjct 357 GCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCG 301 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 300 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 256 >seq3861 Length=1043 Score = 123 bits (136), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 893 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAA-TTC 950 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | | |||||||| | ||||||| ||||| | | |||||| | || Sbjct 951 CTCGTTTATGGGGGATAATTGCAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTT 1010 Query 120 ACCCGGACCTGTCGGCCAAGGTGA 143 ||||| ||| | ||||| || || Sbjct 1011 GCCCGGGCCTCTAGGCCAGGGAGA 1034 >seq2467 Length=1061 Score = 109 bits (120), Expect = 8e-22 Identities = 97/118 (82%), Gaps = 5/118 (4%) Strand=Plus/Minus Query 109 TTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 |||||| | || ||||| ||| | ||||| || || || | ||| | | ||||||| Sbjct 1059 TTTCAACGGGTTGCCCGGGCCTCTAGGCCAGGGAGA---ACATGCTGATTCCTTCAGTGT 1003 Query 168 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 1002 AGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751968608935