Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2943 170 4e-40 seq3839 168 1e-39 seq3066 168 1e-39 seq3050 161 2e-37 seq3058 152 9e-35 seq3070 147 4e-33 seq3871 138 2e-30 seq3069 98.7 2e-18 >seq2943 Length=1063 Score = 170 bits (188), Expect = 4e-40 Identities = 194/256 (76%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT------GCTCGAATACAT-- 124 |||||||||||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 551 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 610 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCC 182 | |||||||||||||||||| || | |||||||||||||||||||| || || || Sbjct 611 TTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAG 669 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||||| ||||| | ||||| || ||||||||||||||| Sbjct 670 GTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTT 729 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| Sbjct 730 GGATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-A 788 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 789 GAACGAAAGTTAGAGG 804 >seq3839 Length=1875 Score = 168 bits (186), Expect = 1e-39 Identities = 193/255 (76%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT------GCTCGAATACATTA 126 |||||||||||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 568 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 627 Query 127 -GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCG 183 |||||||||||||||||| || | |||||||||||||||||||| || || || | Sbjct 628 TGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGG 686 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||| ||||| | ||||| || |||||||||||||||| Sbjct 687 TAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 746 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| | Sbjct 747 GATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-AG 805 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 806 AACGAAAGTTAGAGG 820 >seq3066 Length=1199 Score = 168 bits (186), Expect = 1e-39 Identities = 193/255 (76%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT------GCTCGAATACATTA 126 |||||||||||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 424 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 365 Query 127 -GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCG 183 |||||||||||||||||| || | |||||||||||||||||||| || || || | Sbjct 364 TGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGG 306 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||| ||||| | ||||| || |||||||||||||||| Sbjct 305 TAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 246 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| | Sbjct 245 GATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-AG 187 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 186 AACGAAAGTTAGAGG 172 >seq3050 Length=1312 Score = 161 bits (178), Expect = 2e-37 Identities = 190/250 (76%), Gaps = 14/250 (6%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT------GCTCGAATACATTA 126 |||||||||||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 282 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 341 Query 127 -GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCG 183 |||||||||||||||||| || | |||||||||||||||||||| || || || | Sbjct 342 TGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGG 400 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAGAGGTGAAATTCTT 242 |||||||||||||||||| ||||| | ||||| | | || ||||||||||||||| Sbjct 401 TAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGA--GTTAGAGGTGAAATTCTT 458 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| Sbjct 459 GGATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-A 517 Query 303 GAACGAAAGT 312 |||||||||| Sbjct 518 GAACGAAAGT 527 >seq3058 Length=1092 Score = 152 bits (168), Expect = 9e-35 Identities = 178/237 (75%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT------GCTCGAATACATTA 126 |||||||||||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 851 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 910 Query 127 -GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCG 183 |||||||||||||||||| || | |||||||||||||||||||| || || || | Sbjct 911 TGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGG 969 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||| ||||| | ||||| || |||||||||||||||| Sbjct 970 TAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 1029 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| Sbjct 1030 GATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA 1086 >seq3070 Length=1106 Score = 147 bits (162), Expect = 4e-33 Identities = 151/194 (78%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGT 184 |||||||||||||||||| || | |||||||||||||||||||| || || || || Sbjct 45 GCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGT 103 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||| ||||| | ||||| || ||||||||||||||||| Sbjct 104 AATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGG 163 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || ||||| ||| | |||||||| || |||| | ||||||||| ||||| || Sbjct 164 ATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-AGA 222 Query 305 ACGAAAGTTAGGGG 318 ||||||||||| || Sbjct 223 ACGAAAGTTAGAGG 236 >seq3871 Length=1039 Score = 138 bits (152), Expect = 2e-30 Identities = 150/194 (77%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGT 184 |||||||||||||||||| || | |||||||||||||||||||| || || || || Sbjct 25 GCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGT 83 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||| ||||| | ||||| || ||||||||||||||||| Sbjct 84 AATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGG 143 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || ||||| ||| | |||||||| || |||| | || |||||| ||||| || Sbjct 144 ATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTG-TTTCATCAATCA-AGA 201 Query 305 ACGAAAGTTAGGGG 318 ||||||||||| || Sbjct 202 ACGAAAGTTAGAGG 215 >seq3069 Length=1013 Score = 98.7 bits (108), Expect = 2e-18 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||||| ||||| | ||||| || ||||||||||||||| Sbjct 1004 GTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTT 945 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| Sbjct 944 GGATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-A 886 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 885 GAACGAAAGTTAGAGG 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915160564032