Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3913 351 2e-94 seq2965 349 6e-94 seq3933 347 2e-93 seq3026 345 7e-93 seq2228 342 9e-92 seq3854 242 6e-62 seq3813 201 2e-49 seq3024 143 5e-32 >seq3913 Length=1098 Score = 351 bits (388), Expect = 2e-94 Identities = 248/281 (88%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| | |||||||||||||||||||||||||||| Sbjct 258 TACTGAGCAGTATTACTATCGCAACGACGAGCCATCAGTAGGGTAAAACTAACCTGTCTC 317 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || ||||||||||||||||||||| || Sbjct 318 ACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTTGGCG 377 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 AATTTTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 437 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 438 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTG-C 496 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| || ||||||||||||||||||| ||||| Sbjct 497 TAAAAACTCTTTATACTAAAGGATCGATAGGCCGTGCTTTC 537 >seq2965 Length=1130 Score = 349 bits (386), Expect = 6e-94 Identities = 247/280 (88%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 2 ACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||| ||| | ||||| || | ||||| | ||||||||||||||||||||||||||||| Sbjct 749 ACTGAGCAGTATTACTATCGCAACGACGAGCCATCAGTAGGGTAAAACTAACCTGTCTCA 808 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| Sbjct 809 CGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTTGGCGA 868 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 ATTTTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 928 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 929 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTG-CT 987 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| || ||||||||||||||||||| ||||| Sbjct 988 AAAAACTCTTTATACTAAAGGATCGATAGGCCGTGCTTTC 1027 >seq3933 Length=1287 Score = 347 bits (384), Expect = 2e-93 Identities = 247/281 (88%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| | |||||||||||||||||||||||||||| Sbjct 1059 TACTGAGCAGTATTACTATCGCAACGACGAGCCATCAGTAGGGTAAAACTAACCTGTCTC 1000 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || ||||||||||||||||||||| || Sbjct 999 ACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTTGGCG 940 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 939 AATTTTGCTTCGCAATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCAACGTCGCTA 880 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 879 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTG-C 821 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| || ||||||||||||||||||| ||||| Sbjct 820 TAAAAACTCTTTATACTAAAGGATCGATAGGCCGTGCTTTC 780 >seq3026 Length=1143 Score = 345 bits (382), Expect = 7e-93 Identities = 248/282 (88%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| | |||||||||||||||||||||||||||| Sbjct 347 TACTGAGCAGTATTACTATCGCAACGACGAGCCATCAGTAGGGTAAAACTAACCTGTCTC 406 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT-GAACAATCCAACGCTTACC 118 | |||||||||||||||||||||||||||| || ||||| |||||||||||||||| | Sbjct 407 ACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTTGAACAATCCAACGCTTGGC 466 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 GAATTTTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 526 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 527 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTG- 585 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 || ||| || ||||||||||||||||||| ||||| Sbjct 586 CTAAAAACTCTTTATACTAAAGGATCGATAGGCCGTGCTTTC 627 >seq2228 Length=269593 Score = 342 bits (378), Expect = 9e-92 Identities = 246/281 (88%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| | |||||||||||||||||||||||||||| Sbjct 262562 TACTGAGCAGTATTACTATCGCAACGACGAGCCATCAGTAGGGTAAAACTAACCTGTCTC 262503 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || ||||||||||||||||||||| || Sbjct 262502 ACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTTGGCG 262443 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 262442 AATTTTGCTTCGCAATGATAGGAAGGGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 262383 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | | Sbjct 262382 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGGCACCTCTTG-C 262324 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| || ||||||||||||||||||| ||||| Sbjct 262323 TAAAAACTCTTTATACTAAAGGATCGATAGGCCGTGCTTTC 262283 >seq3854 Length=1202 Score = 242 bits (268), Expect = 6e-62 Identities = 173/196 (88%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 |||| || ||||||||||||||||||||| |||||| ||||||| |||||||||||| Sbjct 1202 CCCTTTTGATGGGTGAACAATCCAACGCTTGGCGAATTTTGCTTCGCAATGATAGGAAGA 1143 Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC-ACAAGCCAG 204 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1142 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCCGCCAACAAGCCAG 1083 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||||||||||||| | || ||| || ||||||||||| Sbjct 1082 TTATCCCTGTGGTAACTTTTCTGGCACCTCTTG-CTAAAAACTCTTTATACTAAAGGATC 1024 Query 265 GATAGGCCACACTTTC 280 |||||||| ||||| Sbjct 1023 GATAGGCCGTGCTTTC 1008 >seq3813 Length=1215 Score = 201 bits (222), Expect = 2e-49 Identities = 137/153 (90%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1215 TTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 1156 Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTT 247 |||| ||||||||||||||||||||||||||||||||||||||||||| | || ||| | Sbjct 1155 TGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTG-CTAAAAACT 1097 Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||||||||||||||||||| ||||| Sbjct 1096 CTTTATACTAAAGGATCGATAGGCCGTGCTTTC 1064 >seq3024 Length=1014 Score = 143 bits (158), Expect = 5e-32 Identities = 102/116 (88%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| | |||||||||||||||||||||||||||| Sbjct 897 TACTGAGCAGTATTACTATCGCAACGACGAGCCATCAGTAGGGTAAAACTAACCTGTCTC 956 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 | |||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 957 ACGACGGTCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTT 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854363183904