Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3839 98.7 1e-18 seq3066 98.7 1e-18 seq3058 98.7 1e-18 seq3050 98.7 1e-18 seq2943 98.7 1e-18 seq3871 80.6 3e-13 seq3070 80.6 3e-13 >seq3839 Length=1875 Score = 98.7 bits (108), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 13/185 (7%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| ||| |||| ||| Sbjct 568 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAAT--ATTT 625 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 626 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 684 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| ||||| ||||| | ||||| || | |||||||||||| Sbjct 685 GGTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 744 Query 182 TGGAT 186 ||||| Sbjct 745 TGGAT 749 >seq3066 Length=1199 Score = 98.7 bits (108), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 13/185 (7%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| ||| |||| ||| Sbjct 424 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAAT--ATTT 367 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 366 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 308 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| ||||| ||||| | ||||| || | |||||||||||| Sbjct 307 GGTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 248 Query 182 TGGAT 186 ||||| Sbjct 247 TGGAT 243 >seq3058 Length=1092 Score = 98.7 bits (108), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 13/185 (7%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| ||| |||| ||| Sbjct 851 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAAT--ATTT 908 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 909 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 967 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| |||| ||||| ||||| | ||||| || | |||||||||||| Sbjct 968 GGTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCT 1027 Query 182 TGGAT 186 ||||| Sbjct 1028 TGGAT 1032 >seq3050 Length=1312 Score = 98.7 bits (108), Expect = 1e-18 Identities = 137/186 (74%), Gaps = 16/186 (9%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACATTA 65 |||||||||||| ||||||||| | ||||||| ||| ||| |||| ||| Sbjct 282 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAAT--ATTT 339 Query 66 C---CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCC 121 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 340 CGTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGA 398 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAAAGGTGAAATTC 180 |||||||| |||| ||||| ||||| | ||||| | | || | ||||||||||| Sbjct 399 GGTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGA--GTTAGAGGTGAAATTC 456 Query 181 TTGGAT 186 |||||| Sbjct 457 TTGGAT 462 >seq2943 Length=1063 Score = 98.7 bits (108), Expect = 1e-18 Identities = 134/184 (73%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC------CTTTGCTCGAATACAT-- 63 |||||||||||| ||||||||| | ||||||| ||| ||| ||||| | Sbjct 551 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 610 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC-CGCCC 122 | ||||||||||||||||| || | |||||||||||||| ||||| || || | Sbjct 611 TTGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAG 669 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| |||| ||||| ||||| | ||||| || | ||||||||||||| Sbjct 670 GTAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTT 729 Query 183 GGAT 186 |||| Sbjct 730 GGAT 733 >seq3871 Length=1039 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-TA 125 ||||||||||||||||| || | |||||||||||||| ||||| || || | | || Sbjct 26 CATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGTA 84 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| ||||| ||||| | ||||| || | |||||||||||||||| Sbjct 85 ATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 144 Query 186 T 186 | Sbjct 145 T 145 >seq3070 Length=1106 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-TA 125 ||||||||||||||||| || | |||||||||||||| ||||| || || | | || Sbjct 46 CATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGGTA 104 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| ||||| ||||| | ||||| || | |||||||||||||||| Sbjct 105 ATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 164 Query 186 T 186 | Sbjct 165 T 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511978627360