Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3070 226 5e-57 seq3069 226 5e-57 seq3050 223 7e-56 seq3035 223 7e-56 seq2228 223 7e-56 seq3871 219 8e-55 seq3864 203 6e-50 seq3861 129 1e-27 seq2467 111 3e-22 >seq3070 Length=1106 Score = 226 bits (250), Expect = 5e-57 Identities = 208/258 (81%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 660 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 717 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| || Sbjct 718 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCCTCC 777 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 778 C--TGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 835 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 836 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 895 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 896 ACGTCCCTGCCCTTTGTA 913 >seq3069 Length=1013 Score = 226 bits (250), Expect = 5e-57 Identities = 209/259 (81%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 446 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 389 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 388 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 332 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTT-AAACTCTGTCGTGCTGGGGATAGAGCATT 249 || ||||| ||| | |||| | | ||| |||||| ||||||||||||| | | || Sbjct 331 CCCTGGCCTAGAGGCCCGGGTCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTT 272 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||||| | | | |||||||||| ||||||||||||| ||||| ||| ||||||||| Sbjct 271 GCAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGAT 212 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 211 TACGTCCCTGCCCTTTGTA 193 >seq3050 Length=1312 Score = 223 bits (246), Expect = 7e-56 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 954 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 1011 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 1012 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 1068 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 1069 CCCTGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 1128 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 1129 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1188 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1189 ACGTCCCTGCCCTTTGTA 1206 >seq3035 Length=1372 Score = 223 bits (246), Expect = 7e-56 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 1281 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 1224 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 1223 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 1167 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 1166 CCCTGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 1107 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 1106 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1047 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1046 ACGTCCCTGCCCTTTGTA 1029 >seq2228 Length=269593 Score = 223 bits (246), Expect = 7e-56 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 268068 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 268125 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 268126 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 268182 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 268183 CCCTGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 268242 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| |||||||||| Sbjct 268243 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 268302 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 268303 ACGTCCCTGCCCTTTGTA 268320 >seq3871 Length=1039 Score = 219 bits (242), Expect = 8e-55 Identities = 206/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 641 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 698 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | |||| Sbjct 699 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGTTCT--- 755 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 756 CCCTGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 815 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||||| ||||| ||| ||||||||| Sbjct 816 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTGATA 875 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 876 ACGTCCCTGCCCTTTGTA 893 >seq3864 Length=1207 Score = 203 bits (224), Expect = 6e-50 Identities = 204/258 (79%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 222 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 279 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||||||| || || | || || Sbjct 280 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCATGT---TCT 336 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || ||||| ||| | ||| || | | |||||| ||||||||||||| | | ||| Sbjct 337 CCCTGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGTTTG 396 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | |||||||||| ||||||||||| | ||| ||| |||||||||| Sbjct 397 CAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCG-GAGTC-GGAGCTCGCGTTGATT 454 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 455 ACGTCCCTGCCCTTTGTA 472 >seq3861 Length=1043 Score = 129 bits (142), Expect = 1e-27 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 || || ||||| ||| | ||| || | | |||||| ||||||||||||| | | Sbjct 1034 TCTCCCTGGCCTAGAGGCCCGGGCAACCCGTTGAAACTCCTTCGTGCTGGGGATTGGGGT 975 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||||| | | | |||||||||| ||||||||||||| ||||| ||| ||||||| Sbjct 974 TTGCAATTATCCCCCATAAACGAGGAATTCCTAGTAAGCGCGAGTCATAAGCTCGCGTTG 915 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 914 ATTACGTCCCTGCCCTTTGTA 894 >seq2467 Length=1061 Score = 111 bits (122), Expect = 3e-22 Identities = 87/100 (87%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | ||||| || | ||||| |||||||||||||||| Sbjct 912 CTTCTTAGAGGGACCGGCGTCTTCGAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 969 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||| ||||||||||||||||||||||||| Sbjct 970 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGA 1009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947159185152