Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3345 138 9e-28 seq1351 111 1e-19 >seq3345 Length=207354 Score = 138 bits (152), Expect = 9e-28 Identities = 885/1416 (63%), Gaps = 50/1416 (4%) Strand=Plus/Minus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 || || || || || | ||||||||| |||||||||||||| |||||||| |||||||| Sbjct 112999 TAAATATTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAG 112940 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGA 65581 ||||| ||||| ||||| | ||| | || || ||||| || | || | || || | Sbjct 112939 GCAGTCGGCATTGGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCT 112880 Query 65582 CGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGT 65641 | | |||||| ||| | ||| | | | || | | ||||||||| | Sbjct 112879 TTGAGGGCAGCCCAGTCCCAAA--GGTCTGTAG--GAGTT--TTGTCCCACATATCATAC 112826 Query 65642 TGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTG 65701 || ||| | || || || || || | | | ||| | || || | | Sbjct 112825 TGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCA 112766 Query 65702 GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTA 65761 || | || ||| || | || | ||| || ||||||| || || || || || |||| Sbjct 112765 GCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTG 112706 Query 65762 AGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGA 65821 || ||| | || || ||||| | || | ||||| ||||| | || |||| Sbjct 112705 AGAAGTATTGCTTTCTCACTTTCGTAAGAAATTCTCATCAACACAAACGCATCTGCCATG 112646 Query 65822 CCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACA 65881 || ||||| |||||||| || || | ||| | || ||| ||| | | || ||||| ||| Sbjct 112645 CCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACA 112586 Query 65882 GGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGT 65941 || || |||| | ||| |||| || ||||| | || || | | ||| | Sbjct 112585 GGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCT 112526 Query 65942 CGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTG 66001 |||| || |||| ||| | || | | | |||||| || Sbjct 112525 TTTAATTTTTTAAAATTAAA---TCTATTATTTT---------------CAACAAACATG 112484 Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||| || | || || |||||||| || || | || || | || || | ||| Sbjct 112483 TTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACA 112424 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 | || ||||| ||||| || || || ||||| | ||| | |||||||||||| | Sbjct 112423 ACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTG 112364 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 || || |||||||| |||| |||||| || || || ||||| ||||||| || || || Sbjct 112363 TTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCTACTTGGGCTTCTATAATT 112304 Query 66182 GCGTGCCAAA------GAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCG 66235 | | ||| | |||| | || ||| || | || ||| ||| Sbjct 112303 GACTTCCATAACTCTTGAGCTC-TGACTT-GTTTTATAAATCG-------TTTTTCTTCT 112253 Query 66236 TAATGTT---CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACAC 66292 | || || | || || | ||| || || || | || | || | ||||| Sbjct 112252 TCATATTTGGCATATAGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAA 112193 Query 66293 TTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCA 66352 | || |||||||| || |||| | |||||| |||||| | |||||| ||||| Sbjct 112192 TCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAGATCT 112133 Query 66353 GGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC---GTTGCTCCTCAATGCCGTGATTT 66409 |||||||| | ||| || || || || | |||| || |||| | ||||| || Sbjct 112132 GGTATCCATAAGGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA--CCCGTG-TTC 112076 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || || || | ||| ||||| ||||| |||||||| || || | || || || || Sbjct 112075 TTCTTTAAATCCAAGAATTCAAATATGTCTGCATGCCAAGGCTCTAAATAAATCGCAAAT 112016 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || ||||||| |||||||| || || || | || |||||| | || | | Sbjct 112015 GCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTC 111956 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 ||||| || || || || || || ||||| ||||| | ||| || || | || Sbjct 111955 AACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCT 111896 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCG 66649 | || || || | ||| || ||||| || | || || || ||||| | Sbjct 111895 CTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGT 111836 Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709 | || || || || |||||| || | || || | | ||| |||| || Sbjct 111835 TTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGCAGGAG 111776 Query 66710 CTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAA 66769 ||| || || |||||||| || ||||| || || || | || || ||||| || Sbjct 111775 GAAAGCTGCGGCCGCGGTGTGGCTGCTGAGAATAGTGTAGGGCTTGCATGTGTAAAATAT 111716 Query 66770 TGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCG 66829 | ||||| ||| || || | ||| || |||||||| ||| |||||||| || Sbjct 111715 TTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCT 111656 Query 66830 AGTGCACA-TCGCATCAGGAGGTATTGAGGCCGTTC 66864 | || | | || ||| || | || |||||||| ||| Sbjct 111655 A-TGGAGACTCTCATAAGCATGTGTTGAGGCCTTTC 111621 >seq1351 Length=825266 Score = 111 bits (122), Expect = 1e-19 Identities = 170/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 || |||||||| || || || |||| || ||| ||| || || ||||| || | Sbjct 601616 TTATTCAATGCAATTGAAACTCTACCATGTGTTAAGAAGAAGGCAGACTGGGCGTTACAG 601557 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| ||| | || ||||||||||| ||||| | | || ||||| | || ||| Sbjct 601556 TGGATCGGCAGCAAGACAGCTACATTTGGAGAACGTATAATTGCTTTTGCAGCAGTTGAG 601497 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || |||||||| || ||||| |||| ||||||||||| ||||| || || ||| Sbjct 601496 GGAATATTTTTCTCAGGCAGCTTTGCTTCAATATTTTGGTTGAAAAAACGAGGTCTGATG 601437 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 ||||| |||| ||||| ||||| | || || | || || || ||| | || ||||| Sbjct 601436 CCCGGATTGACTTTCAGTAATGAACTTATTTCTAGGGATGA-GGTATGTTTCGTAATTTT 601378 Query 61636 G 61636 | Sbjct 601377 G 601377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397547121343760