Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17638 378 1e-102 seq250703 320 3e-85 seq3178 289 5e-76 seq123 168 1e-39 >seq17638 Length=4506 Score = 378 bits (418), Expect = 1e-102 Identities = 266/301 (88%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATC-CGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 ||| ||| |||| |||| || |||| ||||||||||||| | ||||| ||||| ||||| Sbjct 112 CTTACCTCCTGGTGATCTCGGATGCTCTTCACTGGGTGTTCGGGGGAACCAGGGATTTTA 171 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 172 CTTTGAAGAAATTAGAGTGTTCAAAGCAGGTATTTGCCTGAATACATTAGCATGGAATAA 231 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 232 TAGAATAGGACGTGCGGTCCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 291 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||||||||| | ||||| || ||||||||||||||||||||||| || ||||| Sbjct 292 GATAGTCGGGGGCATTTGTATTACATCGTCAGAGGTGAAATTCTTGGATTGATGTAAGAC 351 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||||||||||||||| || ||||||||||||||||| |||| ||||||| ||||||| Sbjct 352 AAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-AGAACGAAGGTTAGGG 410 Query 318 G 318 | Sbjct 411 G 411 >seq250703 Length=390 Score = 320 bits (354), Expect = 3e-85 Identities = 220/246 (89%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGG 132 |||||| ||| |||||||||||||||||||||||| ||| ||||||||| |||||||||| Sbjct 126 TTTACTGTGAGAAAATTAGAGTGTTCAAAGCAGGCGTTTCGCTCGAATATATTAGCATGG 185 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||||||||||||||| ||||||||||||||||||||||| || | ||||||||| | Sbjct 186 AATAATAGAATAGGACGTATGGTTCTATTTTGTTGGTTTCTAGAACTGTCGTAATGATAA 245 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||| | ||||||||||| |||||||||||| |||||||||||||| ||| | ||| Sbjct 246 ATAGGAACAGTCGGGGGTGGAGGTATTCAATTGTTAGAGGTGAAATTCTATGATCTTTTG 305 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 306 AGGACCAACTGCTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA-AGAACGAAAGT 364 Query 313 TAGGGG 318 |||||| Sbjct 365 TAGGGG 370 >seq3178 Length=420 Score = 289 bits (320), Expect = 5e-76 Identities = 220/257 (86%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTCGAAT 120 ||| |||||||| ||||||||||||||||||||||||||||||||||| | | | ||||| Sbjct 308 GGAACCAGGACTATTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCATAGGCCCGAAT 249 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 248 ATATTAGCATGGAATAACAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAACTG 189 Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 ||||||||||||| ||||| || |||||| | |||||| | ||||||||||||| Sbjct 188 CCGTAATGATTAAAAGGGACAGCCGGGGGCATTAGTATTTGCACGCTAGAGGTGAAATTC 129 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||| |||||| ||||||||||||| || ||||| |||||||||||||||| Sbjct 128 TTGGATTGTGCAAAGACTTCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 69 Query 301 GTGAACGAAAGTTAGGG 317 ||||||| ||||||| Sbjct 68 -AGAACGAAGGTTAGGG 53 >seq123 Length=7390 Score = 168 bits (186), Expect = 1e-39 Identities = 193/255 (76%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT------GCTCGAATACATTA 126 |||||||||||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 5569 TTTTACTTTGAACAAATTAGAGTGCTCAAAGCGGGCTCAAAATGCCGCTTGAATATTTCG 5510 Query 127 -GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCG 183 |||||||||||||||||| || | |||||||||||||||||||| || || || | Sbjct 5509 TGCATGGAATAATAGAATATGATCT-CGGTTCTATTTTGTTGGTTTTCAGAACTCCGAGG 5451 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||| ||||| | ||||| || |||||||||||||||| Sbjct 5450 TAATGATTAATAGGGATAACTGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 5391 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||| ||||| ||| | |||||||| || |||| | ||||||||| ||||| | Sbjct 5390 GATCGTCGCAAGACGAACATCAGCGAAAGCATTTGCCAAAGGTGTTTTCATCAATCA-AG 5332 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 5331 AACGAAAGTTAGAGG 5317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912664136384