Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq17638 430 5e-118 seq82506 284 5e-74 seq123 138 5e-30 seq141949 120 1e-24 >seq17638 Length=4506 Score = 430 bits (476), Expect = 5e-118 Identities = 438/556 (79%), Gaps = 34/556 (6%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||| |||||||| ||||||| |||||| | | ||||| ||||||| Sbjct 3975 GAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGTGGTAAACTCCATCTAAGGCTAAAT 4034 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||| Sbjct 4035 ATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAA 4094 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCG 219 |||||||||| | | ||||||||||| |||||||||| |||||| | ||| ||||| | Sbjct 4095 AGAGAGTTAACA-GTACGTGAAATTGCTGAAAGGGAAACGCTTGGAGTCAGTCTTGCTCT 4153 Query 220 CAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTC--TTCTGCGGTCAGGCCAGCATCAGC 277 |||| |||||| || | |||| | || | || | |||||||||||||| Sbjct 4154 TTGTTGTTCAACC------TCTG--GGTGTATTCAATATTGAG--CAGGCCAGCATCAGT 4203 Query 278 TCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGG 337 | ||| ||| ||||| || | ||||||||||| ||| || ||||||||| || Sbjct 4204 TTGGGACGTCAGATAATGGTACAGGGAATGTGGCAGCCTC--GGCTGTGTTATAGACCTA 4261 Query 338 GG-TGGA--ATGCGGCCCGCCTGGACTGAGGTCCGCGCTC---CGGC-TAGGATGCTGGC 390 | || ||||| ||| |||||||| | ||| || || | | |||||||||| Sbjct 4262 TACTCGATCATGCGTTCCG----GACTGAGGACTGCGGTCATCCGACCTTGGATGCTGGC 4317 Query 391 GTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAG 450 ||||||| | ||| || |||||||| |||||||||||||||||||||| |||||| Sbjct 4318 GTAATGGCTTTAAACGACCCGTCTT----CACGGACCAAGGAGTCTAACATGCTTGCGAG 4373 Query 451 TGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG 510 |||||||||| |||||||| |||||||||||||||||||| ||||||||| ||| | | Sbjct 4374 TGTTTGGGTGGCAAACCCGAGCGCGTAATGAAAGTGAACGTAGGTGGGAA-TCGT-AAGA 4431 Query 511 TGCACCATCGACCGATCCTGATGTCTT-CGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||||||||||||| | ||| || ||| | | ||| | ||||||||||| |||||| Sbjct 4432 TGCACCATCGACCGGT-CTGCTGGCTTGCTGGCGGAATCGAGTAAGAGCAAGTATGTTGG 4490 Query 570 GACCCGAAAGATGGTG 585 |||||||||||||||| Sbjct 4491 GACCCGAAAGATGGTG 4506 >seq82506 Length=2398 Score = 284 bits (314), Expect = 5e-74 Identities = 431/605 (71%), Gaps = 59/605 (10%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 588 TGTGATACGCTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 529 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 528 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 469 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| | Sbjct 468 TGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAGGGTAG 409 Query 203 GCAACCAGACTTGC--CCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCG 260 | |||| ||| || | | ||| || | | | |||| | ||| | Sbjct 408 GAGGTCAGAGATGCGTCCTAGGAT--TCAGCCTTGCTTTTGCTTGGTG--TTTTTCCTAG 353 Query 261 GT---CAGGCCAGCATCAG-CTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCT 316 || ||||||| | || | | |||| | ||| || || |||| ||||| ||| Sbjct 352 GTTTGCAGGCCAACGTCGGTTTTGGGCACT-GGAGAATGGTGGGAGGAACGTGGCACCCC 294 Query 317 TCGGGGGGTGTTATAGCC-CGGGGTGGAATGCGGC--CCG----CCTGGACTG-AG-GTC 367 |||||| ||||||||||| | ||| || | || ||| | |||| | || || Sbjct 293 TCGGGGTGTGTTATAGCCTCCTACTGG-ATACAGCGACCGAGACCGAGGACAGCAGCGTA 235 Query 368 CGCGC------------TCCGGC-----------TAGGATGCTGGCGTAATGGTTGTAAG 404 | ||| || ||| ||||| | |||| |||||| | Sbjct 234 CTCGCAAGAGCGGGCCTTCGGGCACCTTTACGCTTAGGACGTTGGCATAATGGCCCTCTA 175 Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 | ||||||||| |||||||||| ||||| ||||||||| |||||||| ||| Sbjct 174 CCACCCGTCTTGAAACACGGACC---------AACATGTATGCGAGTCTTTGGGTGGCAA 124 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCG 524 |||| | ||| |||||||||||| |||||||| || | |||||||||||||||| Sbjct 123 ACCCATAGGCGCAATGAAAGTGAATTCAGGTGGGATCC--GCAAGGTGCACCATCGACCG 66 Query 525 ATCCTGATGTCTTCGGA----TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | ||||| | |||||||||||||||||||| |||||||||||||||||| Sbjct 65 ATCCTCACGTCTTTTAAGTCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGAAAGA 6 Query 581 TGGTG 585 ||||| Sbjct 5 TGGTG 1 >seq123 Length=7390 Score = 138 bits (152), Expect = 5e-30 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| || || |||||||||||||||||||||||||||||| ||| |||| ||| | Sbjct 1783 GAGCACAGATGCTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGTCGAAGTCAGGG 1724 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||||| Sbjct 1723 GAAACCCTGATGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGTA 1664 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 1663 TAGGGGCGA 1655 Score = 136 bits (150), Expect = 2e-29 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 2601 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 2542 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 2541 ATTACCGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 2482 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 2481 AGAGAGTTCAAGAGTACGTGAAA 2459 >seq141949 Length=735 Score = 120 bits (132), Expect = 1e-24 Identities = 66/66 (100%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 8 Query 95 TAAATA 100 |||||| Sbjct 7 TAAATA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2074056569650