Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq74834 221 3e-55 seq110065 203 7e-50 seq220586 143 6e-32 seq246058 111 3e-22 seq192604 102 2e-19 seq130999 87.8 4e-15 >seq74834 Length=1907 Score = 221 bits (244), Expect = 3e-55 Identities = 273/358 (76%), Gaps = 13/358 (4%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| |||||||||||||||| Sbjct 343 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTTG-CTGCATCAGGCTTTCGCCCA 400 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 401 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 460 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| |||| | ||||||||||||||||||||| Sbjct 461 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTAGGCTTGGTGAGCCATTACCTCAC 520 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGC--CCGAAGGTCCCCTGC 238 |||| | || || | | | || | |||| | | || | | || ||| | Sbjct 521 CAACAACCTGATAGGCCGCGAGTC-CATCCTTGACCAAAATTCTTTCCAA-CTCCTAGCC 578 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAG-CGTCCGTTTCCGAACG-TTATCCCCCACTA 296 | | | | || ||||| ||||||||| ||| ||||||| |||| ||||||| | | Sbjct 579 ATGCGGCTGAAGCTCGTATCCGGTATTAGACGT-CGTTTCC-AACGCTTATCCCAGAGTC 636 Query 297 CCAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT-CTCAAGAGAAGCAAGCT 352 ||||| || || | | |||||||||||| |||| || || |||| |||||||| Sbjct 637 AAGGGCAGGTTACTCACGTGTTACTCACCCGTTCGCCACTGATCCAGAGGAGCAAGCT 694 >seq110065 Length=950 Score = 203 bits (224), Expect = 7e-50 Identities = 248/334 (74%), Gaps = 11/334 (3%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| | | ||| ||||||||| |||||| Sbjct 623 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTGCGCCCA 680 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 681 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 740 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | || |||||||| || | ||| ||||||||||||| ||||||||| ||| Sbjct 741 GTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCAC 800 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAA----GGCCCGAAGGTCCCCTG 237 |||| |||| || | | ||| ||||| || | || || | | | || Sbjct 801 CAACAAGCTGATAGGCCGCGGGCCCATCTCGTACCCAAAAAGTTTCCACCAAGAGACATG 860 Query 238 CTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTAC 297 | | || ||| | ||| ||||||||| | |||||| | ||||||| | ||| Sbjct 861 CAT----CCCAAGGTCATATTCGGTATTAGACCCAGTTTCCCAGGCTTATCCCAAAGTAC 916 Query 298 CAGGCAGAT-TCCTAGGCATTACTCACCCGTCCG 330 |||||||| || | | |||||||||||| || Sbjct 917 GAGGCAGATCACCCACGTGTTACTCACCCGTTCG 950 >seq220586 Length=203 Score = 143 bits (158), Expect = 6e-32 Identities = 107/123 (87%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| | | ||| ||||||||||||||| Sbjct 80 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCGTCAGGCTTTCGCCCA 137 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 138 TTGCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 197 Query 122 GTG 124 ||| Sbjct 198 GTG 200 >seq246058 Length=368 Score = 111 bits (122), Expect = 3e-22 Identities = 150/209 (72%), Gaps = 14/209 (7%) Strand=Plus/Plus Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 |||||||||||||||||||| ||| ||||||||||||||| ||| ||||| |||||||| Sbjct 1 TGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCGTTACCCCACCAACT 60 Query 187 AGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCC 246 |||||||| ||| ||| ||| | ||| || | ||||| || Sbjct 61 AGCTAATCAGACGCGGGCCGATC--CTTCGGCA----------GTAAAC--CTTTCCCCA 106 Query 247 GTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGAT 306 ||| ||||| ||||||||||| ||||||| |||||| || || | || | | Sbjct 107 AAAGGGCGTATCCGGTATTAGCGCACGTTTCCATGCGTTATTCCGAACCAAAGGGTACGT 166 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||| | | ||||||||||||| |||||| Sbjct 167 TCCCACGTGTTACTCACCCGTCTGCCGCT 195 >seq192604 Length=994 Score = 102 bits (112), Expect = 2e-19 Identities = 86/102 (84%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGA-CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||| ||| || || | | ||||||| || ||||||||||||| | ||| Sbjct 612 TTTACAATCCATAGAACCGTCGTCCTT-CACGCGGGAT-GGCTGGATCAGGCGCTAACCC 669 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 ||||||||||||||| |||||||||||||||||||||||||| Sbjct 670 ATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGG 711 >seq130999 Length=701 Score = 87.8 bits (96), Expect = 4e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 |||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 1 CTCAGACCAGCTAAGGATCGTCGCCTTGGTGCGCTCTTACCACACCAACTAGCTAATCCT 60 Query 197 ACCTAGGCTCATC 209 || |||||||| Sbjct 61 ACGCGGGCTCATC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069029670240